mRNA_Ecto-sp13_S_contig55935.15911.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig55935.15911.1
Unique NamemRNA_Ecto-sp13_S_contig55935.15911.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig55935.15911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig55935contigEcto-sp13_S_contig55935:355..906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score93.2
Seed ortholog evalue1.4e-16
Seed eggNOG ortholog1046724.KB889829_gene3020
Preferred nametus
Model size552
KEGG koko:K10748
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006274,GO:0006275,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0034641,GO:0034645,GO:0043111,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0060255,GO:0065007,GO:0071704,GO:0071807,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:2000104,GO:2000112,GO:2000113
Exons1
EggNOG free text desc.DNA replication terminus site-binding protein (Ter protein)
EggNOG OGs1NE22@1224,1RS77@1236,28I61@1,2Z895@2,468XE@72275
Cds size552
COG Functional cat.L
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463775.0189865-CDS-Ecto-sp13_S_contig55935:354..9061681463775.0189865-CDS-Ecto-sp13_S_contig55935:354..906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig55935 355..906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig55935.15911.1prot_Ecto-sp13_S_contig55935.15911.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig55935 355..906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig55935.15911.1

>prot_Ecto-sp13_S_contig55935.15911.1 ID=prot_Ecto-sp13_S_contig55935.15911.1|Name=mRNA_Ecto-sp13_S_contig55935.15911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
MDNSEITSALNLLHDDITDGIEALKTLLRDSSFSKASVFQLPATEQGEDL
PPVEAIEPTQIDGVAAFGLALDALSKTTAVGNESTRYVFRLPGAISVETS
TPDQFTGIVNKVNTAKDQFDKVAHRIKDEDHRFELLHTIFPKLIYPQLIR
KLQVCTRQTKSVTFTWGQKPSSSTITVEQADNRL
back to top

mRNA from alignment at Ecto-sp13_S_contig55935:355..906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig55935.15911.1 ID=mRNA_Ecto-sp13_S_contig55935.15911.1|Name=mRNA_Ecto-sp13_S_contig55935.15911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55935:355..906+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATAACAGTGAAATCACTTCCGCTCTGAACTTACTTCACGACGACAT
TACTGATGGCATCGAAGCACTGAAAACGCTGCTTAGGGATTCGTCATTCT
CTAAAGCATCTGTTTTTCAGTTACCCGCAACAGAACAAGGCGAGGACTTG
CCGCCAGTAGAGGCGATTGAACCAACTCAAATTGACGGCGTTGCTGCCTT
TGGACTTGCCCTGGACGCACTTTCAAAGACAACCGCGGTTGGGAATGAAT
CGACCAGGTATGTATTTCGGCTGCCTGGCGCAATTTCTGTGGAAACGAGT
ACCCCTGATCAATTCACTGGCATCGTTAACAAGGTCAATACGGCAAAAGA
TCAGTTCGACAAAGTGGCCCATCGCATAAAGGATGAAGATCATAGATTCG
AACTCCTCCACACGATTTTCCCAAAGCTTATCTATCCGCAGCTCATCCGG
AAGCTGCAAGTCTGCACTCGGCAAACTAAGTCAGTCACGTTCACCTGGGG
CCAGAAGCCTAGCAGTTCAACGATCACAGTCGAACAAGCAGACAACCGCT
TG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig55935:355..906+

>mRNA_Ecto-sp13_S_contig55935.15911.1 ID=mRNA_Ecto-sp13_S_contig55935.15911.1|Name=mRNA_Ecto-sp13_S_contig55935.15911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55935:355..906+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATAACAGTGAAATCACTTCCGCTCTGAACTTACTTCACGACGACAT
TACTGATGGCATCGAAGCACTGAAAACGCTGCTTAGGGATTCGTCATTCT
CTAAAGCATCTGTTTTTCAGTTACCCGCAACAGAACAAGGCGAGGACTTG
CCGCCAGTAGAGGCGATTGAACCAACTCAAATTGACGGCGTTGCTGCCTT
TGGACTTGCCCTGGACGCACTTTCAAAGACAACCGCGGTTGGGAATGAAT
CGACCAGGTATGTATTTCGGCTGCCTGGCGCAATTTCTGTGGAAACGAGT
ACCCCTGATCAATTCACTGGCATCGTTAACAAGGTCAATACGGCAAAAGA
TCAGTTCGACAAAGTGGCCCATCGCATAAAGGATGAAGATCATAGATTCG
AACTCCTCCACACGATTTTCCCAAAGCTTATCTATCCGCAGCTCATCCGG
AAGCTGCAAGTCTGCACTCGGCAAACTAAGTCAGTCACGTTCACCTGGGG
CCAGAAGCCTAGCAGTTCAACGATCACAGTCGAACAAGCAGACAACCGCT
TG
back to top