prot_Ecto-sp13_S_contig5586.15895.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5586.15895.1
Unique Nameprot_Ecto-sp13_S_contig5586.15895.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length127
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5586.15895.1 vs. uniprot
Match: D7FVI7_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI7_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.480e-52
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 0 
Query:   31 DQGSSGESPLGLPDGGLGRRALVAHTKNEGNRRQFFQLYRRMARQVEIVGDTEALSEEGHTPRQEFIRKMLKMGRVPVPILLRDPSALQDLNLAHRG 127
            D GSSGE PLGLPDGGLGRRALVAHTKNEGNRRQFFQLYRRMARQVEIVGDT ALS+EGHTPRQEFIRKMLKMGRVPVPILLRDPSALQDLNLAHRG
Sbjct:  583 DSGSSGEPPLGLPDGGLGRRALVAHTKNEGNRRQFFQLYRRMARQVEIVGDTGALSQEGHTPRQEFIRKMLKMGRVPVPILLRDPSALQDLNLAHRG 679
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5586.15895.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVI7_ECTSI1.480e-5295.88Hypothetical leucine rich repeat calcium binding p... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5586contigEcto-sp13_S_contig5586:1406..2370 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5586.15895.1mRNA_Ecto-sp13_S_contig5586.15895.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5586 1405..2370 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5586.15895.1 ID=prot_Ecto-sp13_S_contig5586.15895.1|Name=mRNA_Ecto-sp13_S_contig5586.15895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
VGGRRNISSGSPQSERDGHRLPPVALIGGPDQGSSGESPLGLPDGGLGRR
ALVAHTKNEGNRRQFFQLYRRMARQVEIVGDTEALSEEGHTPRQEFIRKM
LKMGRVPVPILLRDPSALQDLNLAHRG
back to top