mRNA_Ecto-sp13_S_contig5586.15895.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5586.15895.1
Unique NamemRNA_Ecto-sp13_S_contig5586.15895.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5586.15895.1 vs. uniprot
Match: D7FVI7_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI7_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.480e-52
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:   91 DQGSSGESPLGLPDGGLGRRALVAHTKNEGNRRQFFQLYRRMARQVEIVGDTEALSEEGHTPRQEFIRKMLKMGRVPVPILLRDPSALQDLNLAHRG 381
            D GSSGE PLGLPDGGLGRRALVAHTKNEGNRRQFFQLYRRMARQVEIVGDT ALS+EGHTPRQEFIRKMLKMGRVPVPILLRDPSALQDLNLAHRG
Sbjct:  583 DSGSSGEPPLGLPDGGLGRRALVAHTKNEGNRRQFFQLYRRMARQVEIVGDTGALSQEGHTPRQEFIRKMLKMGRVPVPILLRDPSALQDLNLAHRG 679
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5586.15895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVI7_ECTSI1.480e-5295.88Hypothetical leucine rich repeat calcium binding p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5586contigEcto-sp13_S_contig5586:1405..2370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score190.3
Seed ortholog evalue5.6e-46
Seed eggNOG ortholog2880.D7FVI7
Model size384
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Cds size381
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463773.613269-CDS-Ecto-sp13_S_contig5586:1405..15611681463773.613269-CDS-Ecto-sp13_S_contig5586:1405..1561Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5586 1406..1561 -
1681463773.6417882-CDS-Ecto-sp13_S_contig5586:1818..19461681463773.6417882-CDS-Ecto-sp13_S_contig5586:1818..1946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5586 1819..1946 -
1681463773.6505141-CDS-Ecto-sp13_S_contig5586:2273..23701681463773.6505141-CDS-Ecto-sp13_S_contig5586:2273..2370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5586 2274..2370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5586.15895.1prot_Ecto-sp13_S_contig5586.15895.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5586 1406..2370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5586.15895.1

>prot_Ecto-sp13_S_contig5586.15895.1 ID=prot_Ecto-sp13_S_contig5586.15895.1|Name=mRNA_Ecto-sp13_S_contig5586.15895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
VGGRRNISSGSPQSERDGHRLPPVALIGGPDQGSSGESPLGLPDGGLGRR
ALVAHTKNEGNRRQFFQLYRRMARQVEIVGDTEALSEEGHTPRQEFIRKM
LKMGRVPVPILLRDPSALQDLNLAHRG
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mRNA from alignment at Ecto-sp13_S_contig5586:1405..2370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5586.15895.1 ID=mRNA_Ecto-sp13_S_contig5586.15895.1|Name=mRNA_Ecto-sp13_S_contig5586.15895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=966bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5586:1405..2370- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGGTGGAAGGCGAAATATTTCTTCTGGGAGTCCTCAATCTGAGAGAGA
TGGCCATCGTTTGCCACCAGTGGCACTCATCGGTGGTCCTGATCAAGGTA
AGTCGCGTGGAACACTCGGAAGGGGGCACTACGCCCTGGGTTCGACAGTT
GTCCATGGTTGAATTCTGTGCAAAGAGGCTGCCCCTGGCTCCTCGCCGCT
ACGGCAACTGTCCTCCTGATTTCATTCCCGTGTTTAACGTTTCTTCTCGG
TCACGCGCGAGCGGGCGGAGGCGTAATGTTATTTCTCTCCTGAATGACGG
CGCTCTTCGTTGTCATCAGTAGTTCTCGCCGCACTCACGACGCCCTTAGT
CAACTAAAATTGTGCGTTTTCTTCCCTCTCTTGGCCGCGCACTTGTCGTT
TTTCTTTGTGAAATTGGACACAAGGGAGCAGCGGAGAATCCCCGCTCGGG
CTCCCTGACGGGGGCTTAGGGCGACGCGCACTAGTTGCACACACCAAGAA
CGAGGGCAACCGTCGCCAGTTTTTCCAGCTCTACCGGCGAATGGCGCGGC
AGGTGAACCTCTCCTGCGTACTTGTGGTTCTCCTGTGCAATTTTGTTTTC
AGCAGCTCTTGGATGAGAGTTAGCCCTGTCGAACATTCGTATGGATGGAA
ACTCCATGGTTGCCGTGCCCGAGACCTGGATTCTAGTGCCACAGACACGC
GGTTTCTGGACCCCTACGCCGGAACCACTAGCCTGACAGCAGCCATCTAC
GAATAGAGCCAGATCCACACAATGCAACACTAAGGGTAGGATGCTGCGGA
CCCCGCCAGGTGGAAATCGTTGGGGACACCGAGGCGCTCAGCGAGGAAGG
ACACACGCCCCGGCAGGAGTTCATTCGCAAGATGCTCAAGATGGGGCGCG
TGCCGGTGCCCATCCTCCTCCGCGACCCTTCGGCGCTCCAGGACTTGAAT
CTCGCCCACAGGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5586:1405..2370-

>mRNA_Ecto-sp13_S_contig5586.15895.1 ID=mRNA_Ecto-sp13_S_contig5586.15895.1|Name=mRNA_Ecto-sp13_S_contig5586.15895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5586:1405..2370- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGGTGGAAGGCGAAATATTTCTTCTGGGAGTCCTCAATCTGAGAGAGA
TGGCCATCGTTTGCCACCAGTGGCACTCATCGGTGGTCCTGATCAAGGGA
GCAGCGGAGAATCCCCGCTCGGGCTCCCTGACGGGGGCTTAGGGCGACGC
GCACTAGTTGCACACACCAAGAACGAGGGCAACCGTCGCCAGTTTTTCCA
GCTCTACCGGCGAATGGCGCGGCAGGTGGAAATCGTTGGGGACACCGAGG
CGCTCAGCGAGGAAGGACACACGCCCCGGCAGGAGTTCATTCGCAAGATG
CTCAAGATGGGGCGCGTGCCGGTGCCCATCCTCCTCCGCGACCCTTCGGC
GCTCCAGGACTTGAATCTCGCCCACAGGGGG
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