prot_Ecto-sp13_S_contig20028.6534.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig20028.6534.1
Unique Nameprot_Ecto-sp13_S_contig20028.6534.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length96
Homology
BLAST of mRNA_Ecto-sp13_S_contig20028.6534.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 2.540e-55
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0
Query:    6 CLRSNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADE 92
            C   NNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADE
Sbjct:  127 CSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADE 213          
BLAST of mRNA_Ecto-sp13_S_contig20028.6534.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.320e-35
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = 0
Query:    6 CLRSNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADE 92
            C   NNI+HPKEN+T R L Y+CNRC Y E+A   SCVY NNL+ T   KLDIV  DVV+DPTLQRSK+ IC++CNY+EAVFFQAD+
Sbjct:    4 CKECNNILHPKENRTTRTLFYACNRCAYREEAGQ-SCVYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADD 89          
BLAST of mRNA_Ecto-sp13_S_contig20028.6534.1 vs. uniprot
Match: A0A8H7VS23_9FUNG (DNA-directed RNA polymerase subunit n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VS23_9FUNG)

HSP 1 Score: 91.7 bits (226), Expect = 5.580e-22
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 0
Query:    3 FSLCLRSNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEVR 94
            F  CL  NN+++P+E+KT+R+L+++C  C+YEEDA +  CVYR+ +I  A  +  IV +D+  DPTL R+ N ICEKC   EAVFFQ+   R
Sbjct:    4 FKYCLDCNNLLYPREDKTNRRLLFACRNCQYEEDADN-LCVYRHEIIHAASEQTMIV-SDLSADPTLPRA-NVICEKCGSQEAVFFQSTSRR 92          
BLAST of mRNA_Ecto-sp13_S_contig20028.6534.1 vs. uniprot
Match: K0THW0_THAOC (TFIIS-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0THW0_THAOC)

HSP 1 Score: 92.0 bits (227), Expect = 1.980e-21
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 0
Query:    1 IVFSLCLRSNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQAD 91
            ++   C   +++++PKEN ++RKL+Y+C  C+Y E A +G  +Y+N L    GN L  V  DV DDPTL RS+NA C KC ++EAV+FQ+D
Sbjct:   63 LLMRFCPHDSSMLYPKENPSERKLVYACRLCRYTEYA-AGQLIYKNVLKKEVGNILHTVPADVSDDPTLPRSQNAHCGKCGHSEAVYFQSD 152          
BLAST of mRNA_Ecto-sp13_S_contig20028.6534.1 vs. uniprot
Match: A0A162XV76_PHYB8 (DNA-directed RNA polymerase subunit n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162XV76_PHYB8)

HSP 1 Score: 89.4 bits (220), Expect = 4.540e-21
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 0
Query:    3 FSLCLRSNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEVR 94
            F  CL  NN+++P+E+K+ R+LM+SC  C+YEEDA +  CVY + +I T   +  ++ TD+  DPTL R+ N  C +CN+ EAVFFQ+   R
Sbjct:    4 FKYCLECNNLLYPREDKSSRRLMFSCRNCQYEEDADN-MCVYSHKIIHTPSEQT-MMLTDLATDPTLPRA-NVTCPQCNHPEAVFFQSSSRR 92          
BLAST of mRNA_Ecto-sp13_S_contig20028.6534.1 vs. uniprot
Match: A0A7S3NJ32_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ32_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 9.820e-21
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 0
Query:    6 CLRSNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQAD 91
            C +  N+  P+E +T R LM +C  C YEE A S   VY N +      +LDI+  ++ DDPTLQRS + +CE CNY+EAV FQA+
Sbjct:   36 CPQCGNMWQPREERTTRTLMLNCRNCGYEEPATSYK-VYENRIKKEVSTRLDIINPEITDDPTLQRSNDVVCENCNYSEAVLFQAE 120          
BLAST of mRNA_Ecto-sp13_S_contig20028.6534.1 vs. uniprot
Match: A0A8B7CCB1_PHODC (DNA-directed RNA polymerase subunit n=3 Tax=Arecaceae TaxID=4710 RepID=A0A8B7CCB1_PHODC)

HSP 1 Score: 86.3 bits (212), Expect = 7.410e-20
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 0
Query:    3 FSLCLRSNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQA 90
               C   NNI++PKE+K  + L+++C  C YEE A S  CVYRN +    G +  I+Q DV +DPTL R+K+  C KC++ EAVFFQA
Sbjct:    4 MKFCRECNNILYPKEDKQKKILLFACRNCDYEEVADS-FCVYRNEVHHAVGERTQILQ-DVANDPTLPRTKDVRCVKCDHPEAVFFQA 89          
BLAST of mRNA_Ecto-sp13_S_contig20028.6534.1 vs. uniprot
Match: A0A1X2HED9_SYNRA (DNA-directed RNA polymerase subunit n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HED9_SYNRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.490e-19
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 0
Query:    3 FSLCLRSNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEVR 94
            F  CL  NN+++P+E+K +R+LM++C  C+YEEDA +  CVYR+ +I     +  +V +D+  DPTL R+ N  C +C Y EAVFFQ+   R
Sbjct:    4 FKYCLDCNNLLYPREDKANRRLMFACRNCQYEEDADN-FCVYRHEIIHQPSEQT-MVLSDLSIDPTLPRA-NVTCPQCGYEEAVFFQSSSRR 92          
BLAST of mRNA_Ecto-sp13_S_contig20028.6534.1 vs. uniprot
Match: A0A8H7UCI9_9FUNG (DNA-directed RNA polymerase subunit n=2 Tax=Umbelopsis TaxID=64561 RepID=A0A8H7UCI9_9FUNG)

HSP 1 Score: 85.5 bits (210), Expect = 1.490e-19
Identity = 40/88 (45.45%), Postives = 62/88 (70.45%), Query Frame = 0
Query:    3 FSLCLRSNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQA 90
            F  C   NN+++P+E+KT+RKL+++C  C +EEDA + +CVYR+ ++  A ++  +V TD+  DPTL R+  A C +C Y EAVFFQ+
Sbjct:    4 FKYCSECNNMLYPREDKTNRKLLFACRNCHFEEDADN-NCVYRHEIVH-APSEQTMVLTDLSADPTLPRTTTA-CPRCGYQEAVFFQS 88          
BLAST of mRNA_Ecto-sp13_S_contig20028.6534.1 vs. uniprot
Match: A0A1B8ABA8_FUSPO (DNA-directed RNA polymerase subunit n=29 Tax=Fusarium TaxID=5506 RepID=A0A1B8ABA8_FUSPO)

HSP 1 Score: 85.5 bits (210), Expect = 2.330e-19
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 0
Query:    1 IVFSLCLRSNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADE 92
            I F  C   +N+++PKE++   KL ++C  C+Y EDA+S +CV+RNNL T+AG    + Q DV  DPTL RS    C  C + EAVFFQ+ +
Sbjct:   22 ITFRFCSECSNMLYPKEDQDAHKLQFTCRTCQYTEDAKS-TCVFRNNLNTSAGETAGVTQ-DVGSDPTLPRSTKT-CPSCQHTEAVFFQSQQ 110          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20028.6534.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE56_ECTSI2.540e-5596.55TFIIS-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YYP5_9STRA4.320e-3565.52DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A8H7VS23_9FUNG5.580e-2248.91DNA-directed RNA polymerase subunit n=1 Tax=Mucor ... [more]
K0THW0_THAOC1.980e-2146.15TFIIS-type domain-containing protein n=1 Tax=Thala... [more]
A0A162XV76_PHYB84.540e-2145.65DNA-directed RNA polymerase subunit n=1 Tax=Phycom... [more]
A0A7S3NJ32_9STRA9.820e-2146.51Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8B7CCB1_PHODC7.410e-2047.73DNA-directed RNA polymerase subunit n=3 Tax=Arecac... [more]
A0A1X2HED9_SYNRA1.490e-1944.57DNA-directed RNA polymerase subunit n=1 Tax=Syncep... [more]
A0A8H7UCI9_9FUNG1.490e-1945.45DNA-directed RNA polymerase subunit n=2 Tax=Umbelo... [more]
A0A1B8ABA8_FUSPO2.330e-1945.65DNA-directed RNA polymerase subunit n=29 Tax=Fusar... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 4..59
e-value: 0.0036
score: 25.5
NoneNo IPR availableGENE3D2.20.25.10coord: 2..46
e-value: 1.5E-14
score: 55.0
NoneNo IPR availableGENE3D2.20.25.10coord: 47..95
e-value: 4.9E-13
score: 50.5
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 3..93
NoneNo IPR availablePANTHERPTHR11239:SF1DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9coord: 3..93
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 54..90
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 3..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20028contigEcto-sp13_S_contig20028:663..1638 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20028.6534.1mRNA_Ecto-sp13_S_contig20028.6534.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig20028 663..1638 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig20028.6534.1 ID=prot_Ecto-sp13_S_contig20028.6534.1|Name=mRNA_Ecto-sp13_S_contig20028.6534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
IVFSLCLRSNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLIT
TAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEVRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001529DNA-dir_RNA_pol_M/15kDasu