prot_Ecto-sp13_S_contig1980.6417.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1980.6417.1
Unique Nameprot_Ecto-sp13_S_contig1980.6417.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length210
Homology
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: D8LR46_ECTSI (Integrin alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR46_ECTSI)

HSP 1 Score: 389 bits (999), Expect = 2.050e-125
Identity = 206/210 (98.10%), Postives = 207/210 (98.57%), Query Frame = 0
Query:    1 MPSAKRVLAAGLQVLRSQAATVWPGHLEYPLGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSAAGEILVVFGAATFPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 210
            MP AKRVLAAGLQVL SQAATVWPGHLEYPLGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSAAGEILVVFGAATFPAVVG+ DLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF
Sbjct:    1 MPFAKRVLAAGLQVLGSQAATVWPGHLEYPLGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSAAGEILVVFGAATFPAVVGVADLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 210          
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A839CTJ8_9PROT (FG-GAP repeat protein n=1 Tax=Holosporaceae bacterium 'Namur' TaxID=2759495 RepID=A0A839CTJ8_9PROT)

HSP 1 Score: 159 bits (403), Expect = 8.800e-43
Identity = 87/178 (48.88%), Postives = 133/178 (74.72%), Query Frame = 0
Query:   34 LDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSAAGEILVVFGAAT-FPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 210
            LDG++GF++  E S+   GYSVS VGD+N+DG +D+I+G +P + S  G +YVVFGS++  + ++++S LDG+NGFK+ G  + + +G +V GAGD+N DG DD+++GA+GA+S+AG   VVFG+ T F + + ++ LDGS GF + GA ++  +GFS++ AGDVNNDG  D+IIGA+
Sbjct:  147 LDGSNGFKLNGEVSSSFSGYSVSSVGDINDDGIDDLIIG-APYANSQKGISYVVFGSKTPFSSSINLSGLDGSNGFKLNGEVSDNLSGYSVSGAGDINNDGIDDLIIGAYGANSSAGASYVVFGSKTPFSSSINLSGLDGSNGFKLNGAVSNSLSGFSVSGAGDVNNDGIDDLIIGAY 323          
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: UPI00198FE1FF (FG-GAP repeat protein n=1 Tax=Sphingomonadaceae bacterium TaxID=1930536 RepID=UPI00198FE1FF)

HSP 1 Score: 160 bits (404), Expect = 1.030e-41
Identity = 99/184 (53.80%), Postives = 127/184 (69.02%), Query Frame = 0
Query:   34 LDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGAS----SAAGEILVVFGA-ATFPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGA 209
            L+G++GFR+       R G+SV+  GDVN DGF+DVI+G     P++ S AG +YVVFGS +  A  +D++ LDG+NGF+I+G DA D +G AV  AGDVNGDG+DDV+VGA GA     S AGE  VVFG+ A F A V +T LDGS GF + G    D +GFS+A+AGDVN DG  D+IIGA
Sbjct:  212 LNGSNGFRINGIDQVDRSGFSVASAGDVNGDGFDDVIVGAHLADPNADSAAGESYVVFGSGAGFAAAIDLADLDGSNGFRIDGIDADDLSGRAVASAGDVNGDGFDDVIVGAHGADPNGDSYAGESYVVFGSGAGFAATVDLTALDGSNGFRLNGIDAYDRSGFSVASAGDVNGDGFDDVIIGA 395          
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A7C7GL88_9FLAO (Flagellin_N domain-containing protein (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7GL88_9FLAO)

HSP 1 Score: 154 bits (390), Expect = 6.290e-41
Identity = 96/198 (48.48%), Postives = 134/198 (67.68%), Query Frame = 0
Query:   20 ATVWPGHLEYPLGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGAS---SAAGEILVVFGAAT-FPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 210
            A+ W   L+  L  LDG++GFR+    +    G SVS  GDVNNDG++DVI+G     PD  S+AG +YVVFG  S    +LD+S+LDG+NGF+++G DAGD +G +V  AGD+N DGYDDV++GA+ A      +GE  VVFG A+ + A + ++ LDGS GF + G   +D +G S+++AGDVNNDG  D+IIGA+
Sbjct:  168 ASGWSASLD--LSSLDGSNGFRLDGVDAGDWSGGSVSSAGDVNNDGYDDVIIGAYTADPDGKSSAGESYVVFGKASGWNASLDLSSLDGSNGFRLDGVDAGDNSGKSVSNAGDINNDGYDDVIIGAYKADPNGGNSGESYVVFGKASGWNASLDLSSLDGSNGFRLDGVDVADYSGISVSSAGDVNNDGYDDVIIGAY 363          
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A2D9RBF8_9PROT (Uncharacterized protein n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2D9RBF8_9PROT)

HSP 1 Score: 155 bits (393), Expect = 3.760e-40
Identity = 96/189 (50.79%), Postives = 128/189 (67.72%), Query Frame = 0
Query:   30 PLGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAW----GASSAAGEILVVFGAAT-FPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 210
            PL  LDGT GF +    +  R G SV+  GDVN DG +DVI+G     P+ TS+ G +Y+VFGS S  A NLD+S+LDGTNGF + G   GD +G +V GAGDVNGDG  DV++GA     G++S AGE  V+FG ++ F + V I+DLDG+ GFV+ G + SD +GFS+ +AGDVN DG  D++IG +
Sbjct:  740 PLSELDGTTGFVINGITAGDRSGASVADAGDVNGDGIDDVIIGAYTADPNGTSS-GESYIVFGSSSGFASNLDLSSLDGTNGFAVSGVTTGDQSGISVAGAGDVNGDGIGDVIIGAHFASPGSTSDAGESYVIFGQSSGFVSNVEISDLDGTNGFVVAGISNSDNSGFSVDSAGDVNGDGVDDLVIGGY 927          
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A2D6T2C7_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6T2C7_9PROT)

HSP 1 Score: 153 bits (387), Expect = 5.150e-40
Identity = 91/182 (50.00%), Postives = 126/182 (69.23%), Query Frame = 0
Query:   29 YPLGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNL-DVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSAAGEILVVFGAATFPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGA 209
            + L  L+GT+GFR      +G+ GYSVS  GDVN DG  D+++G +P+  S+AGAAYVVFG  S  +  L + S L+GT GF+++G  + D AG  V  AGDVNGDGYDD ++GA GA+S+AG   VVFGAA+F +   I++L+GS GF + G   SD +G S++ AGD+N DG AD+++GA
Sbjct:   82 FNLSDLNGTNGFRFDG--GSGKTGYSVSSAGDVNGDGIEDMLVG-APNYRSSAGAAYVVFGDTSIGSDGLIEHSDLNGTTGFRVDGFSSSDLAGFHVSRAGDVNGDGYDDFIIGACGANSSAGSSFVVFGAASFSSSFQISELNGSTGFRLNGIDASDQSGISVSQAGDINGDGYADLLVGA 260          
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A1P8WCF4_9PLAN (FG-GAP repeat n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WCF4_9PLAN)

HSP 1 Score: 149 bits (376), Expect = 6.660e-40
Identity = 88/188 (46.81%), Postives = 122/188 (64.89%), Query Frame = 0
Query:   31 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSA----AGEILVVFG-AATFPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 210
            L  L+GT GFR+         G SVS  GDVN DGF+D+I+G     P   S AG +YVVFG        +D+S LDGT GF+++G+DAGD +G++V  AGDVNGDG+DD+++GAW A+S     AGE  V+FG +  F + V ++ LDG+ GF + G+   D  G S+++AGD+N DG  D+IIGA+
Sbjct:   94 LSTLNGTSGFRIDGIDEDDFSGRSVSNAGDVNGDGFDDLIIGARYADPGGDSDAGESYVVFGKSGGFGSTVDLSTLDGTTGFRLDGSDAGDGSGSSVSSAGDVNGDGFDDLVIGAWNAASGGAGGAGETYVLFGKSGGFASAVDLSTLDGTTGFRLDGSDAGDRTGSSVSSAGDLNGDGFDDLIIGAY 281          
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: B4WPK1_SYNS7 (Type I secretion target GGXGXDXXX repeat protein domain protein n=1 Tax=Synechococcus sp. (strain ATCC 29403 / PCC 7335) TaxID=91464 RepID=B4WPK1_SYNS7)

HSP 1 Score: 154 bits (389), Expect = 8.830e-40
Identity = 95/186 (51.08%), Postives = 129/186 (69.35%), Query Frame = 0
Query:   34 LDGTDGFRVTAEFSTG-RLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGAS----SAAGEILVVFGA-ATFPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 210
            LDG++ F V      G R G+SVSG GDVN DGF+DVI+G    +P+   +AG +YVVFG+++     L++S+LDG+NGF I G D+GD++G +V GAGDVNGDG+DDV++GA+ A     +  GE  VVFG  A F AV+ ++ LDGS GF++ G    D +GFS++ AGDVN DG  D+IIGAF
Sbjct:  289 LDGSN-FSVIDGVDRGDRFGHSVSGAGDVNGDGFDDVIIGAYTAAPNGNRSAGESYVVFGTDAGFPTTLELSSLDGSNGFVINGVDSGDYSGYSVSGAGDVNGDGFDDVIIGAYQADPDGVNITGESYVVFGTDAGFDAVLELSSLDGSNGFILSGIDEFDFSGFSVSGAGDVNGDGFDDLIIGAF 473          
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A4Q3RX66_9CAUL (Uncharacterized protein (Fragment) n=1 Tax=Caulobacteraceae bacterium TaxID=1978230 RepID=A0A4Q3RX66_9CAUL)

HSP 1 Score: 152 bits (384), Expect = 1.550e-39
Identity = 90/183 (49.18%), Postives = 126/183 (68.85%), Query Frame = 0
Query:   34 LDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSA---AGEILVVFGAATFPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 210
            LD   GF+++   S  + G+SV G GD+N DGF+DVI+G    SP+ T + GA+YVVFGS++     +++++LDG NGF+I G  AGD +G +V  AGDVNGDG+DD++VGAW A +    +G   VVFG A+F A + ++ LDGS GF + GA   D +G S+A+AGDVN DG  D+IIGA+
Sbjct:  157 LDPASGFQISGAASVDQSGWSVDGAGDINGDGFDDVIIGAWLASPNGTQS-GASYVVFGSDAGFGSGINLASLDGNNGFQIRGAAAGDRSGDSVSSAGDVNGDGFDDLIVGAWRADADYYNSGASYVVFGDASFGAAIELSALDGSNGFRIGGARPGDFSGCSVASAGDVNGDGVDDLIIGAY 338          
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A2G7GQN5_9CHRO (Uncharacterized protein n=1 Tax=Chroococcales cyanobacterium IPPAS B-1203 TaxID=2049454 RepID=A0A2G7GQN5_9CHRO)

HSP 1 Score: 153 bits (386), Expect = 1.560e-39
Identity = 95/187 (50.80%), Postives = 129/187 (68.98%), Query Frame = 0
Query:   31 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGA----SSAAGEILVVFGAAT-FPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGA 209
            L  LDG++GF +       R G SVS  GDVN DGF+DVI+G     P+  S AG +YVVFGS S  A ++D+++LDG+NGF + G D  DF+G +V  AGDVNGDG+DDV++GA  A    +S+AGE  VVFG+++ FPA + + +LDGS GFV+ G    D++G S+++AGDVN DG  D+IIGA
Sbjct:   80 LANLDGSNGFVLNGIDVNDRSGRSVSSAGDVNGDGFDDVIIGAPNADPNGNSFAGESYVVFGSGSGFAASVDLASLDGSNGFVLNGIDEDDFSGESVSSAGDVNGDGFDDVIIGAIYADPNGNSSAGESYVVFGSSSGFPASIDLANLDGSNGFVLNGIDEDDSSGESVSSAGDVNGDGFDDVIIGA 266          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR46_ECTSI2.050e-12598.10Integrin alpha n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A839CTJ8_9PROT8.800e-4348.88FG-GAP repeat protein n=1 Tax=Holosporaceae bacter... [more]
UPI00198FE1FF1.030e-4153.80FG-GAP repeat protein n=1 Tax=Sphingomonadaceae ba... [more]
A0A7C7GL88_9FLAO6.290e-4148.48Flagellin_N domain-containing protein (Fragment) n... [more]
A0A2D9RBF8_9PROT3.760e-4050.79Uncharacterized protein n=1 Tax=Ponticaulis sp. Ta... [more]
A0A2D6T2C7_9PROT5.150e-4050.00Uncharacterized protein (Fragment) n=1 Tax=Rhodosp... [more]
A0A1P8WCF4_9PLAN6.660e-4046.81FG-GAP repeat n=1 Tax=Fuerstiella marisgermanici T... [more]
B4WPK1_SYNS78.830e-4051.08Type I secretion target GGXGXDXXX repeat protein d... [more]
A0A4Q3RX66_9CAUL1.550e-3949.18Uncharacterized protein (Fragment) n=1 Tax=Cauloba... [more]
A0A2G7GQN5_9CHRO1.560e-3950.80Uncharacterized protein n=1 Tax=Chroococcales cyan... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000413Integrin alpha chainPRINTSPR01185INTEGRINAcoord: 120..141
score: 39.25
coord: 50..74
score: 40.88
IPR013519Integrin alpha beta-propellorSMARTSM00191int_alpha_rptcoord: 116..167
e-value: 7.0E-5
score: 32.2
coord: 47..99
e-value: 1.4E-5
score: 34.5
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 37..96
score: 8.957
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 173..210
score: 6.759
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 106..164
score: 8.84
IPR013517FG-GAP repeatPFAMPF01839FG-GAPcoord: 121..147
e-value: 3.6E-6
score: 27.0
coord: 52..87
e-value: 6.4E-7
score: 29.4
IPR028994Integrin alpha, N-terminalGENE3D2.130.10.130coord: 16..98
e-value: 7.1E-12
score: 47.1
IPR028994Integrin alpha, N-terminalGENE3D2.130.10.130coord: 99..210
e-value: 1.4E-19
score: 72.3
NoneNo IPR availablePANTHERPTHR23221:SF11coord: 28..94
NoneNo IPR availablePANTHERPTHR23221GLYCOSYLPHOSPHATIDYLINOSITOL PHOSPHOLIPASE Dcoord: 97..209
coord: 28..94
NoneNo IPR availablePANTHERPTHR23221:SF11coord: 97..209
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..210
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availableSUPERFAMILY69318Integrin alpha N-terminal domaincoord: 36..209

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1980contigEcto-sp13_S_contig1980:12078..15121 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1980.6417.1mRNA_Ecto-sp13_S_contig1980.6417.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1980 11857..15121 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1980.6417.1 ID=prot_Ecto-sp13_S_contig1980.6417.1|Name=mRNA_Ecto-sp13_S_contig1980.6417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MPSAKRVLAAGLQVLRSQAATVWPGHLEYPLGLLDGTDGFRVTAEFSTGR
LGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNLDV
SALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSAAG
EILVVFGAATFPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNND
GAADMIIGAF
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000413Integrin_alpha
IPR013519Int_alpha_beta-p
IPR013517FG-GAP
IPR028994Integrin_alpha_N