mRNA_Ecto-sp13_S_contig1980.6417.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: D8LR46_ECTSI (Integrin alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR46_ECTSI) HSP 1 Score: 389 bits (999), Expect = 3.700e-124 Identity = 206/210 (98.10%), Postives = 207/210 (98.57%), Query Frame = 3
Query: 222 MPSAKRVLAAGLQVLRSQAATVWPGHLEYPLGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSAAGEILVVFGAATFPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 851
MP AKRVLAAGLQVL SQAATVWPGHLEYPLGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSAAGEILVVFGAATFPAVVG+ DLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF
Sbjct: 1 MPFAKRVLAAGLQVLGSQAATVWPGHLEYPLGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSAAGEILVVFGAATFPAVVGVADLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 210
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A839CTJ8_9PROT (FG-GAP repeat protein n=1 Tax=Holosporaceae bacterium 'Namur' TaxID=2759495 RepID=A0A839CTJ8_9PROT) HSP 1 Score: 159 bits (403), Expect = 9.260e-42 Identity = 87/178 (48.88%), Postives = 133/178 (74.72%), Query Frame = 3
Query: 321 LDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSAAGEILVVFGAAT-FPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 851
LDG++GF++ E S+ GYSVS VGD+N+DG +D+I+G +P + S G +YVVFGS++ + ++++S LDG+NGFK+ G + + +G +V GAGD+N DG DD+++GA+GA+S+AG VVFG+ T F + + ++ LDGS GF + GA ++ +GFS++ AGDVNNDG D+IIGA+
Sbjct: 147 LDGSNGFKLNGEVSSSFSGYSVSSVGDINDDGIDDLIIG-APYANSQKGISYVVFGSKTPFSSSINLSGLDGSNGFKLNGEVSDNLSGYSVSGAGDINNDGIDDLIIGAYGANSSAGASYVVFGSKTPFSSSINLSGLDGSNGFKLNGAVSNSLSGFSVSGAGDVNNDGIDDLIIGAY 323
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: UPI00198FE1FF (FG-GAP repeat protein n=1 Tax=Sphingomonadaceae bacterium TaxID=1930536 RepID=UPI00198FE1FF) HSP 1 Score: 160 bits (404), Expect = 1.100e-40 Identity = 99/184 (53.80%), Postives = 127/184 (69.02%), Query Frame = 3
Query: 321 LDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGAS----SAAGEILVVFGA-ATFPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGA 848
L+G++GFR+ R G+SV+ GDVN DGF+DVI+G P++ S AG +YVVFGS + A +D++ LDG+NGF+I+G DA D +G AV AGDVNGDG+DDV+VGA GA S AGE VVFG+ A F A V +T LDGS GF + G D +GFS+A+AGDVN DG D+IIGA
Sbjct: 212 LNGSNGFRINGIDQVDRSGFSVASAGDVNGDGFDDVIVGAHLADPNADSAAGESYVVFGSGAGFAAAIDLADLDGSNGFRIDGIDADDLSGRAVASAGDVNGDGFDDVIVGAHGADPNGDSYAGESYVVFGSGAGFAATVDLTALDGSNGFRLNGIDAYDRSGFSVASAGDVNGDGFDDVIIGA 395
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A7C7GL88_9FLAO (Flagellin_N domain-containing protein (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7GL88_9FLAO) HSP 1 Score: 154 bits (390), Expect = 6.430e-40 Identity = 96/198 (48.48%), Postives = 134/198 (67.68%), Query Frame = 3
Query: 279 ATVWPGHLEYPLGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGAS---SAAGEILVVFGAAT-FPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 851
A+ W L+ L LDG++GFR+ + G SVS GDVNNDG++DVI+G PD S+AG +YVVFG S +LD+S+LDG+NGF+++G DAGD +G +V AGD+N DGYDDV++GA+ A +GE VVFG A+ + A + ++ LDGS GF + G +D +G S+++AGDVNNDG D+IIGA+
Sbjct: 168 ASGWSASLD--LSSLDGSNGFRLDGVDAGDWSGGSVSSAGDVNNDGYDDVIIGAYTADPDGKSSAGESYVVFGKASGWNASLDLSSLDGSNGFRLDGVDAGDNSGKSVSNAGDINNDGYDDVIIGAYKADPNGGNSGESYVVFGKASGWNASLDLSSLDGSNGFRLDGVDVADYSGISVSSAGDVNNDGYDDVIIGAY 363
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A2D9RBF8_9PROT (Uncharacterized protein n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2D9RBF8_9PROT) HSP 1 Score: 155 bits (393), Expect = 4.200e-39 Identity = 96/189 (50.79%), Postives = 128/189 (67.72%), Query Frame = 3
Query: 309 PLGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAW----GASSAAGEILVVFGAAT-FPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 851
PL LDGT GF + + R G SV+ GDVN DG +DVI+G P+ TS+ G +Y+VFGS S A NLD+S+LDGTNGF + G GD +G +V GAGDVNGDG DV++GA G++S AGE V+FG ++ F + V I+DLDG+ GFV+ G + SD +GFS+ +AGDVN DG D++IG +
Sbjct: 740 PLSELDGTTGFVINGITAGDRSGASVADAGDVNGDGIDDVIIGAYTADPNGTSS-GESYIVFGSSSGFASNLDLSSLDGTNGFAVSGVTTGDQSGISVAGAGDVNGDGIGDVIIGAHFASPGSTSDAGESYVIFGQSSGFVSNVEISDLDGTNGFVVAGISNSDNSGFSVDSAGDVNGDGVDDLVIGGY 927
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A2D6T2C7_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6T2C7_9PROT) HSP 1 Score: 153 bits (387), Expect = 5.240e-39 Identity = 91/182 (50.00%), Postives = 126/182 (69.23%), Query Frame = 3
Query: 306 YPLGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNL-DVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSAAGEILVVFGAATFPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGA 848
+ L L+GT+GFR +G+ GYSVS GDVN DG D+++G +P+ S+AGAAYVVFG S + L + S L+GT GF+++G + D AG V AGDVNGDGYDD ++GA GA+S+AG VVFGAA+F + I++L+GS GF + G SD +G S++ AGD+N DG AD+++GA
Sbjct: 82 FNLSDLNGTNGFRFDG--GSGKTGYSVSSAGDVNGDGIEDMLVG-APNYRSSAGAAYVVFGDTSIGSDGLIEHSDLNGTTGFRVDGFSSSDLAGFHVSRAGDVNGDGYDDFIIGACGANSSAGSSFVVFGAASFSSSFQISELNGSTGFRLNGIDASDQSGISVSQAGDINGDGYADLLVGA 260
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A1P8WCF4_9PLAN (FG-GAP repeat n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WCF4_9PLAN) HSP 1 Score: 149 bits (376), Expect = 6.560e-39 Identity = 88/188 (46.81%), Postives = 122/188 (64.89%), Query Frame = 3
Query: 312 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSA----AGEILVVFG-AATFPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 851
L L+GT GFR+ G SVS GDVN DGF+D+I+G P S AG +YVVFG +D+S LDGT GF+++G+DAGD +G++V AGDVNGDG+DD+++GAW A+S AGE V+FG + F + V ++ LDG+ GF + G+ D G S+++AGD+N DG D+IIGA+
Sbjct: 94 LSTLNGTSGFRIDGIDEDDFSGRSVSNAGDVNGDGFDDLIIGARYADPGGDSDAGESYVVFGKSGGFGSTVDLSTLDGTTGFRLDGSDAGDGSGSSVSSAGDVNGDGFDDLVIGAWNAASGGAGGAGETYVLFGKSGGFASAVDLSTLDGTTGFRLDGSDAGDRTGSSVSSAGDLNGDGFDDLIIGAY 281
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: B4WPK1_SYNS7 (Type I secretion target GGXGXDXXX repeat protein domain protein n=1 Tax=Synechococcus sp. (strain ATCC 29403 / PCC 7335) TaxID=91464 RepID=B4WPK1_SYNS7) HSP 1 Score: 154 bits (389), Expect = 9.130e-39 Identity = 95/186 (51.08%), Postives = 129/186 (69.35%), Query Frame = 3
Query: 321 LDGTDGFRVTAEFSTG-RLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGAS----SAAGEILVVFGA-ATFPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 851
LDG++ F V G R G+SVSG GDVN DGF+DVI+G +P+ +AG +YVVFG+++ L++S+LDG+NGF I G D+GD++G +V GAGDVNGDG+DDV++GA+ A + GE VVFG A F AV+ ++ LDGS GF++ G D +GFS++ AGDVN DG D+IIGAF
Sbjct: 289 LDGSN-FSVIDGVDRGDRFGHSVSGAGDVNGDGFDDVIIGAYTAAPNGNRSAGESYVVFGTDAGFPTTLELSSLDGSNGFVINGVDSGDYSGYSVSGAGDVNGDGFDDVIIGAYQADPDGVNITGESYVVFGTDAGFDAVLELSSLDGSNGFILSGIDEFDFSGFSVSGAGDVNGDGFDDLIIGAF 473
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A4Q3RX66_9CAUL (Uncharacterized protein (Fragment) n=1 Tax=Caulobacteraceae bacterium TaxID=1978230 RepID=A0A4Q3RX66_9CAUL) HSP 1 Score: 152 bits (384), Expect = 1.570e-38 Identity = 90/183 (49.18%), Postives = 126/183 (68.85%), Query Frame = 3
Query: 321 LDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGASSA---AGEILVVFGAATFPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGAF 851
LD GF+++ S + G+SV G GD+N DGF+DVI+G SP+ T + GA+YVVFGS++ +++++LDG NGF+I G AGD +G +V AGDVNGDG+DD++VGAW A + +G VVFG A+F A + ++ LDGS GF + GA D +G S+A+AGDVN DG D+IIGA+
Sbjct: 157 LDPASGFQISGAASVDQSGWSVDGAGDINGDGFDDVIIGAWLASPNGTQS-GASYVVFGSDAGFGSGINLASLDGNNGFQIRGAAAGDRSGDSVSSAGDVNGDGFDDLIVGAWRADADYYNSGASYVVFGDASFGAAIELSALDGSNGFRIGGARPGDFSGCSVASAGDVNGDGVDDLIIGAY 338
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Match: A0A2G7GQN5_9CHRO (Uncharacterized protein n=1 Tax=Chroococcales cyanobacterium IPPAS B-1203 TaxID=2049454 RepID=A0A2G7GQN5_9CHRO) HSP 1 Score: 153 bits (386), Expect = 1.590e-38 Identity = 95/187 (50.80%), Postives = 129/187 (68.98%), Query Frame = 3
Query: 312 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAGDVNGDGYDDVMVGAWGA----SSAAGEILVVFGAAT-FPAVVGITDLDGSAGFVMLGATTSDAAGFSLAAAGDVNNDGAADMIIGA 848
L LDG++GF + R G SVS GDVN DGF+DVI+G P+ S AG +YVVFGS S A ++D+++LDG+NGF + G D DF+G +V AGDVNGDG+DDV++GA A +S+AGE VVFG+++ FPA + + +LDGS GFV+ G D++G S+++AGDVN DG D+IIGA
Sbjct: 80 LANLDGSNGFVLNGIDVNDRSGRSVSSAGDVNGDGFDDVIIGAPNADPNGNSFAGESYVVFGSGSGFAASVDLASLDGSNGFVLNGIDEDDFSGESVSSAGDVNGDGFDDVIIGAIYADPNGNSSAGESYVVFGSSSGFPASIDLANLDGSNGFVLNGIDEDDSSGESVSSAGDVNGDGFDDVIIGA 266 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1980.6417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1980.6417.1 >prot_Ecto-sp13_S_contig1980.6417.1 ID=prot_Ecto-sp13_S_contig1980.6417.1|Name=mRNA_Ecto-sp13_S_contig1980.6417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp MPSAKRVLAAGLQVLRSQAATVWPGHLEYPLGLLDGTDGFRVTAEFSTGRback to top mRNA from alignment at Ecto-sp13_S_contig1980:11857..15121+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1980.6417.1 ID=mRNA_Ecto-sp13_S_contig1980.6417.1|Name=mRNA_Ecto-sp13_S_contig1980.6417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1980:11857..15121+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1980:11857..15121+ >mRNA_Ecto-sp13_S_contig1980.6417.1 ID=mRNA_Ecto-sp13_S_contig1980.6417.1|Name=mRNA_Ecto-sp13_S_contig1980.6417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1980:11857..15121+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |