prot_Ecto-sp13_S_contig195.6272.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig195.6272.1
Unique Nameprot_Ecto-sp13_S_contig195.6272.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length110
Homology
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BLAST of mRNA_Ecto-sp13_S_contig195.6272.1 vs. uniprot
Match: D7FQM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM7_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 3.230e-38
Identity = 74/97 (76.29%), Postives = 84/97 (86.60%), Query Frame = 0 
Query:    6 VLGLLSLASIFVAAGILACAVLPCVYCCIGKSRQARLKTRLEKGQHRGCAGNFLMVLVSWAALACVASAIAGLGESDSGLVVIEDGTEDIAKDVLQV 102
            VLGLL+LASIFVAAG+LACAVLPC+YCC  KSRQA L TRLE G HR CAG  LMVLVSWAALAC +SAIAGL ++DSG++VIED TE IAKDVL++
Sbjct:    5 VLGLLTLASIFVAAGLLACAVLPCLYCCFRKSRQAHLVTRLENGPHRHCAGGLLMVLVSWAALACCSSAIAGLEKADSGMLVIEDRTEAIAKDVLEI 101
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BLAST of mRNA_Ecto-sp13_S_contig195.6272.1 vs. uniprot
Match: A0A6H5L0W0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0W0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.110e-10
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 0 
Query:    8 GLLSLASIFVAAGILACAVLPCVYCCIGKSRQARLKTRLEKGQHRGCAGNFLMVLVSWAALACVASAIAGLGESDSGLVVIEDGTEDIAKDVLQV 102
            GL++L  +F+ AG+L           +G SRQ RL+ R++ G+     GN LMVL S AA+A  A AI GL  +DSGL  IED T+++A D+L +
Sbjct:   59 GLVTLIIVFLVAGLLXXXXXXXXXXXLGTSRQERLRERMKFGKQTHYGGNILMVLASVAAIASAAGAIWGLQRADSGLTNIEDATQNMATDMLTI 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig195.6272.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQM7_ECTSI3.230e-3876.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0W0_9PHAE2.110e-1043.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..76
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 77..109
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 35..54
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
NoneNo IPR availableTMHMMTMhelixcoord: 15..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig195contigEcto-sp13_S_contig195:699..1865 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig195.6272.1mRNA_Ecto-sp13_S_contig195.6272.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig195 699..1865 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig195.6272.1 ID=prot_Ecto-sp13_S_contig195.6272.1|Name=mRNA_Ecto-sp13_S_contig195.6272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MFGGAVLGLLSLASIFVAAGILACAVLPCVYCCIGKSRQARLKTRLEKGQ
HRGCAGNFLMVLVSWAALACVASAIAGLGESDSGLVVIEDGTEDIAKDVL
QVSHVLLQI*
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