mRNA_Ecto-sp13_S_contig195.6272.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig195.6272.1
Unique NamemRNA_Ecto-sp13_S_contig195.6272.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig195.6272.1 vs. uniprot
Match: D7FQM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM7_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 3.230e-38
Identity = 74/97 (76.29%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:   16 VLGLLSLASIFVAAGILACAVLPCVYCCIGKSRQARLKTRLEKGQHRGCAGNFLMVLVSWAALACVASAIAGLGESDSGLVVIEDGTEDIAKDVLQV 306
            VLGLL+LASIFVAAG+LACAVLPC+YCC  KSRQA L TRLE G HR CAG  LMVLVSWAALAC +SAIAGL ++DSG++VIED TE IAKDVL++
Sbjct:    5 VLGLLTLASIFVAAGLLACAVLPCLYCCFRKSRQAHLVTRLENGPHRHCAGGLLMVLVSWAALACCSSAIAGLEKADSGMLVIEDRTEAIAKDVLEI 101
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig195.6272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQM7_ECTSI3.230e-3876.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig195contigEcto-sp13_S_contig195:699..1865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size330
Hectar predicted targeting categorysignal peptide
Exons2
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462988.3268137-CDS-Ecto-sp13_S_contig195:698..8941681462988.3268137-CDS-Ecto-sp13_S_contig195:698..894Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig195 699..894 -
1681462988.3393629-CDS-Ecto-sp13_S_contig195:1731..18651681462988.3393629-CDS-Ecto-sp13_S_contig195:1731..1865Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig195 1732..1865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig195.6272.1prot_Ecto-sp13_S_contig195.6272.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig195 699..1865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig195.6272.1

>prot_Ecto-sp13_S_contig195.6272.1 ID=prot_Ecto-sp13_S_contig195.6272.1|Name=mRNA_Ecto-sp13_S_contig195.6272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MFGGAVLGLLSLASIFVAAGILACAVLPCVYCCIGKSRQARLKTRLEKGQ
HRGCAGNFLMVLVSWAALACVASAIAGLGESDSGLVVIEDGTEDIAKDVL
QVSHVLLQI*
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mRNA from alignment at Ecto-sp13_S_contig195:699..1865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig195.6272.1 ID=mRNA_Ecto-sp13_S_contig195.6272.1|Name=mRNA_Ecto-sp13_S_contig195.6272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1167bp|location=Sequence derived from alignment at Ecto-sp13_S_contig195:699..1865- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGGTGGCGCAGTCCTCGGCCTCCTTTCGCTGGCATCGATTTTCGT
CGCCGCTGGGATACTGGCGTGCGCTGTGCTCCCCTGCGTCTACTGTTGCA
TCGGGAAGTCCAGGCAGGCCCGTCTCAAGACAAGGTGAGCGTTTTGTTTT
ATCGAGTCTACTCAATTATCTCTGGCTTCAACGCTTCATTTTCCCCGACA
TGGTCCGTCCTACTGCAATCATCGTGCGTGATTCTCAGAGTTGCCTCCTT
CAGAGTTCCGACCTCCCCCAATTGCAAATCGGGGTTTCATTCGCGAGTCA
AATATTCGGCTCTCCCAATTCCGAATGAAAAAAAACAGGGCCCCCCAGTA
TAGAAGTTTGTGACAAAAAAATACAGGCCCACAGCAGTAGTATGGTGCTT
TGGGATAGGCACCAAGAACGTCATTCCGCTGTTTTTCTCACAGCTCACGA
AATTTCAAGCTGTCCCTTGTTGGCAGTGGCCGCTCGTGACCATTCCGCAC
CAGTTGCACCCAGCCCTACGGCTCGCCTCGGCGAGTTGAGGGAACGGTGA
CGTCAAACGTCGACGTTTTATGCAGCGGAATCAAGTACAATCTTACGATG
GATACCACCTCCGCCAAAAATCGACTGTCGAGCATCTTTTGACTGTGCCT
CGCTGGGAAACGTCGATACGTTATTATCTCGTCCACGAATGACTACGGTT
GCCGGTAGTTCCGAATATTTAAAATCAGTTTTGGGAAGCAGTCGTGGGCC
ACGACAATCCTTCAAATGTTCGTCCCATGAAAATGGTGAACCATCAAACC
CTTTGATTACGATCGCTGAAGGTTTTATCGCTGAAGGCCGAAGGACTTAC
AAACCATCATGTATGTAACTCAAAAAAAGCACCCCCACATACGTCACATC
ATTTTGTCGTGCCTCACTCCCGTGCATTGCCTTGCTTGGCCGCCCCTTCC
GCTGTGTTTGGTGCGTGCCAGGCTAGAGAAGGGCCAACATCGCGGCTGCG
CGGGAAATTTCCTGATGGTGCTTGTCAGCTGGGCGGCCTTAGCTTGTGTC
GCGAGCGCTATTGCGGGGTTGGGAGAGTCGGACTCTGGCTTGGTCGTCAT
CGAGGACGGCACTGAAGACATCGCCAAAGACGTCCTACAGGTGAGTCACG
TATTGTTGCAGATATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig195:699..1865-

>mRNA_Ecto-sp13_S_contig195.6272.1 ID=mRNA_Ecto-sp13_S_contig195.6272.1|Name=mRNA_Ecto-sp13_S_contig195.6272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig195:699..1865- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGGTGGCGCAGTCCTCGGCCTCCTTTCGCTGGCATCGATTTTCGT
CGCCGCTGGGATACTGGCGTGCGCTGTGCTCCCCTGCGTCTACTGTTGCA
TCGGGAAGTCCAGGCAGGCCCGTCTCAAGACAAGGCTAGAGAAGGGCCAA
CATCGCGGCTGCGCGGGAAATTTCCTGATGGTGCTTGTCAGCTGGGCGGC
CTTAGCTTGTGTCGCGAGCGCTATTGCGGGGTTGGGAGAGTCGGACTCTG
GCTTGGTCGTCATCGAGGACGGCACTGAAGACATCGCCAAAGACGTCCTA
CAGGTGAGTCACGTATTGTTGCAGATATGA
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