prot_Ecto-sp13_S_contig19358.6207.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19358.6207.1
Unique Nameprot_Ecto-sp13_S_contig19358.6207.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length42
Homology
BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A812SN87_SYMMI (YPT1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SN87_SYMMI)

HSP 1 Score: 83.6 bits (205), Expect = 1.720e-19
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 40
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDF
Sbjct:    7 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDF 46          
BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: D7G118_ECTSI (Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G118_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.940e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 40
            DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF
Sbjct:    7 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 46          
BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A835Z965_9STRA (Rab1A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z965_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.110e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 40
            DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF
Sbjct:    7 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 46          
BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: UPI001ECA16C8 (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=UPI001ECA16C8)

HSP 1 Score: 82.4 bits (202), Expect = 2.190e-19
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 40
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYI+TIGVDF
Sbjct:    6 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDF 45          
BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A397AW93_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AW93_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.210e-19
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFVS 42
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYI+TIGVDF S
Sbjct:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFES 42          
BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A816KI72_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816KI72_BRANA)

HSP 1 Score: 80.1 bits (196), Expect = 4.820e-19
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFVS 42
            D+LFKL+LIGDSGVGKSCLLLRFADD++ DSYISTIGVDFVS
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFVS 47          
BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A7J6PST1_PEROL (Ras- protein rabd1 n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PST1_PEROL)

HSP 1 Score: 82.8 bits (203), Expect = 5.390e-19
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 40
            DHLFKLVLIGDSGVGKSCLLLRFADD+FTDSYI+TIGVDF
Sbjct:    8 DHLFKLVLIGDSGVGKSCLLLRFADDSFTDSYITTIGVDF 47          
BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A482S367_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S367_9ARCH)

HSP 1 Score: 80.5 bits (197), Expect = 6.130e-19
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFVS 42
            D+LFKL+LIGDSGVGKSCLLLRFADD +T+SYISTIGVDFVS
Sbjct:   22 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFVS 63          
BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A7S1XNK2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNK2_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.500e-19
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 40
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDF
Sbjct:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDF 40          
BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A7S2N4U8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N4U8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.010e-19
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 40
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDF
Sbjct:   15 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDF 54          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812SN87_SYMMI1.720e-1997.50YPT1 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
D7G118_ECTSI1.940e-19100.00Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835Z965_9STRA2.110e-19100.00Rab1A, rab family GTPase n=1 Tax=Tribonema minus T... [more]
UPI001ECA16C82.190e-1995.00Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A397AW93_9STRA3.210e-1992.86Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A816KI72_BRANA4.820e-1988.10(rape) hypothetical protein n=1 Tax=Brassica napus... [more]
A0A7J6PST1_PEROL5.390e-1995.00Ras- protein rabd1 n=3 Tax=Perkinsus olseni TaxID=... [more]
A0A482S367_9ARCH6.130e-1988.10Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1XNK2_9STRA6.500e-1997.50Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2N4U8_9STRA9.010e-1997.50Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 4..25
score: 58.6
coord: 27..42
score: 36.57
NoneNo IPR availableGENE3D3.40.50.300coord: 1..42
e-value: 8.0E-14
score: 53.2
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 1..40
NoneNo IPR availablePANTHERPTHR24073:SF1096RAS-RELATED PROTEIN RAB-1Bcoord: 1..40
NoneNo IPR availablePROSITEPS51419RABcoord: 1..42
score: 10.9
IPR001806Small GTPasePFAMPF00071Rascoord: 5..41
e-value: 1.4E-13
score: 50.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19358contigEcto-sp13_S_contig19358:2564..2689 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19358.6207.1mRNA_Ecto-sp13_S_contig19358.6207.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19358 2564..2689 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19358.6207.1 ID=prot_Ecto-sp13_S_contig19358.6207.1|Name=mRNA_Ecto-sp13_S_contig19358.6207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFVS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase