mRNA_Ecto-sp13_S_contig19358.6207.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19358.6207.1
Unique NamemRNA_Ecto-sp13_S_contig19358.6207.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A812SN87_SYMMI (YPT1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SN87_SYMMI)

HSP 1 Score: 83.6 bits (205), Expect = 1.720e-19
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 120
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDF
Sbjct:    7 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDF 46
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BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: D7G118_ECTSI (Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G118_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.940e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 120
            DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF
Sbjct:    7 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 46
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BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A835Z965_9STRA (Rab1A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z965_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.110e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 120
            DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF
Sbjct:    7 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 46
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BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: UPI001ECA16C8 (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=UPI001ECA16C8)

HSP 1 Score: 82.4 bits (202), Expect = 2.190e-19
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 120
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYI+TIGVDF
Sbjct:    6 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDF 45
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BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A397AW93_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AW93_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.210e-19
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFVS 126
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYI+TIGVDF S
Sbjct:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFES 42
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BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A816KI72_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816KI72_BRANA)

HSP 1 Score: 80.1 bits (196), Expect = 4.820e-19
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFVS 126
            D+LFKL+LIGDSGVGKSCLLLRFADD++ DSYISTIGVDFVS
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFVS 47
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BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A7J6PST1_PEROL (Ras- protein rabd1 n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PST1_PEROL)

HSP 1 Score: 82.8 bits (203), Expect = 5.390e-19
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 120
            DHLFKLVLIGDSGVGKSCLLLRFADD+FTDSYI+TIGVDF
Sbjct:    8 DHLFKLVLIGDSGVGKSCLLLRFADDSFTDSYITTIGVDF 47
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BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A482S367_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S367_9ARCH)

HSP 1 Score: 80.5 bits (197), Expect = 6.130e-19
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFVS 126
            D+LFKL+LIGDSGVGKSCLLLRFADD +T+SYISTIGVDFVS
Sbjct:   22 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFVS 63
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BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A7S1XNK2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNK2_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.500e-19
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 120
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDF
Sbjct:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDF 40
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Match: A0A7S2N4U8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N4U8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.010e-19
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDF 120
            DHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDF
Sbjct:   15 DHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDF 54
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19358.6207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812SN87_SYMMI1.720e-1997.50YPT1 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
D7G118_ECTSI1.940e-19100.00Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835Z965_9STRA2.110e-19100.00Rab1A, rab family GTPase n=1 Tax=Tribonema minus T... [more]
UPI001ECA16C82.190e-1995.00Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A397AW93_9STRA3.210e-1992.86Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A816KI72_BRANA4.820e-1988.10(rape) hypothetical protein n=1 Tax=Brassica napus... [more]
A0A7J6PST1_PEROL5.390e-1995.00Ras- protein rabd1 n=3 Tax=Perkinsus olseni TaxID=... [more]
A0A482S367_9ARCH6.130e-1988.10Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1XNK2_9STRA6.500e-1997.50Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2N4U8_9STRA9.010e-1997.50Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19358contigEcto-sp13_S_contig19358:2564..2689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score85.1
Seed ortholog evalue8.4e-15
Seed eggNOG ortholog42099.EPrPV00000017129
Model size126
KEGG koko:K07874
KEGG Pathwayko05134,map05134
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Rab1 family GTPase. Source PGD
EggNOG OGs1MBW6@121069,KOG0084@1,KOG0084@2759
Cds size126
COG Functional cat.TU
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462983.701892-CDS-Ecto-sp13_S_contig19358:2563..26891681462983.701892-CDS-Ecto-sp13_S_contig19358:2563..2689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19358 2564..2689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19358.6207.1prot_Ecto-sp13_S_contig19358.6207.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19358 2564..2689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19358.6207.1

>prot_Ecto-sp13_S_contig19358.6207.1 ID=prot_Ecto-sp13_S_contig19358.6207.1|Name=mRNA_Ecto-sp13_S_contig19358.6207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
DHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFVS
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mRNA from alignment at Ecto-sp13_S_contig19358:2564..2689-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19358.6207.1 ID=mRNA_Ecto-sp13_S_contig19358.6207.1|Name=mRNA_Ecto-sp13_S_contig19358.6207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19358:2564..2689- (Ectocarpus species13 EcNAP12_S_4_19m)
GATCACCTTTTCAAACTCGTCCTGATCGGGGATTCCGGCGTGGGCAAGTC
GTGCCTGCTGCTGCGTTTCGCTGACGATGCTTTCACGGACAGCTACATCA
GCACCATCGGGGTAGACTTTGTGAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19358:2564..2689-

>mRNA_Ecto-sp13_S_contig19358.6207.1 ID=mRNA_Ecto-sp13_S_contig19358.6207.1|Name=mRNA_Ecto-sp13_S_contig19358.6207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19358:2564..2689- (Ectocarpus species13 EcNAP12_S_4_19m)
GATCACCTTTTCAAACTCGTCCTGATCGGGGATTCCGGCGTGGGCAAGTC
GTGCCTGCTGCTGCGTTTCGCTGACGATGCTTTCACGGACAGCTACATCA
GCACCATCGGGGTAGACTTTGTGAGT
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