prot_Ecto-sp13_S_contig19236.6153.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19236.6153.1
Unique Nameprot_Ecto-sp13_S_contig19236.6153.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length122
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19236.6153.1 vs. uniprot
Match: D8LG47_ECTSI (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG47_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 4.210e-41
Identity = 89/121 (73.55%), Postives = 92/121 (76.03%), Query Frame = 0 
Query:    1 MAPQELVPRRSTSGPGEETSLLRXXXXXXXXXXXXXXXXLLPITPARVPVSTVRREDRRRAQVKKRRPLLFRRSNLPMERPPPLPRPRFLTKKETRRAWERRQRQATSPPAAMVVEKAWRQ 121
            MAPQE VPRRSTSGPGEETS L                 LLPITPARVPVST RREDRRRA VKKRRPLLF+ S L MERPP LPRPRFLTK ET  AWERRQRQATSP AA+VVEKAW+Q
Sbjct:  111 MAPQEPVPRRSTSGPGEETSPLPRSAYLLVVVLLLQQIVLLPITPARVPVSTARREDRRRAPVKKRRPLLFQGSKLLMERPPSLPRPRFLTKAETTSAWERRQRQATSPTAAVVVEKAWQQ 231
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19236.6153.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG47_ECTSI4.210e-4173.55RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19236contigEcto-sp13_S_contig19236:1512..1877 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19236.6153.1mRNA_Ecto-sp13_S_contig19236.6153.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19236 1382..3340 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19236.6153.1 ID=prot_Ecto-sp13_S_contig19236.6153.1|Name=mRNA_Ecto-sp13_S_contig19236.6153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MAPQELVPRRSTSGPGEETSLLRRSAYLLLLLLQQQQVVLLPITPARVPV
STVRREDRRRAQVKKRRPLLFRRSNLPMERPPPLPRPRFLTKKETRRAWE
RRQRQATSPPAAMVVEKAWRQ*
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