mRNA_Ecto-sp13_S_contig19236.6153.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19236.6153.1
Unique NamemRNA_Ecto-sp13_S_contig19236.6153.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19236.6153.1 vs. uniprot
Match: A0A6H5K2G0_9PHAE (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2G0_9PHAE)

HSP 1 Score: 411 bits (1057), Expect = 1.050e-128
Identity = 421/587 (71.72%), Postives = 426/587 (72.57%), Query Frame = 1 
Query:    1 KTKVFMSAIPPTPPYTRENLVRLACPSPAXXXXXXXXXXXXXXXXXXXXXAKKVYKRARRRDLPXXXXXXXXXXXXXXXX-GSVVADNAGEGAGVDRQEGGSEKSAGEEAPALAVPEKQXXXXXXXXXXXXXXXXXXXXXXXVGTPAEASDIASGSNGRXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------TPSRTAWESVRFSRPSGSSSGGGDFCSASVVSRHASLAAAVADTATMDADKPSPSGGTVPEARSREVKS-SSFSSXATNTPGESAKPRXXXXXXXXXXXXXXXVSFAEGTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----ARKSVLGGVVERAPSVPAPMEVRVGGRAQGGAGAVEGHLPKIEADLSFRVMPRGGYPGVGGGVGPGFAGGXXGGVEEAKDAREYGLGVDGGPLTADEVEDEKEMEEXXXXXXXXXXXXXXXXADENDRAIWRETFGEEMPAEVSSGSWIDMDAVRD 1530
            KTKVFMSAIPPTPPYTRENLVRLACP PA                     AKKVYKRARRRDLPXXXXXXXXXXXXXXXX GSVVADNAGEGAGVDRQEGGSEK AGEEAPALAVPEKQ                       VGTPAEASDIASGS+GRXXXXXXXXXXXXXXXXX                                                                           TPSRTAWESVRFSRPSGSSSGGG  CSASVVSRHASLAAAVA+TATMDAD  SPSGGTVP+ARS  VKS SS   X            XXXXXXXXXXXXXXX  FAEGT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    ARKSVLGGVVERAPSVPAPMEVRVGGRA+GGAGAVEGHLPKIEADLSFRVMPRGGYPGVGGG G GFA G   GVEEAKDARE+GLGVDGGPLTADE EDEKEMEE XXXXXXXXXXXXXXX  ENDRAIWRETFGEEMPAEVSSGSWIDMDAVRD
Sbjct:   97 KTKVFMSAIPPTPPYTRENLVRLACPPPAPSSAEGSTSVNGDGHGAAGAGAKKVYKRARRRDLPXXXXXXXXXXXXXXXXXGSVVADNAGEGAGVDRQEGGSEKGAGEEAPALAVPEKQAAAGEAVASSPAAVSDKGDEER-VGTPAEASDIASGSSGRXXXXXXXXXXXXXXXXXDASGEDATASIRAALESVSIYAEEEDACSAAATSAPVDAAXXXXXXXXXXXPASDVANVREVASTTAVKAPAPAPTPSRTAWESVRFSRPSGSSSGGGGRCSASVVSRHASLAAAVAETATMDADNYSPSGGTVPDARSGGVKSFSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAEGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARKSVLGGVVERAPSVPAPMEVRVGGRARGGAGAVEGHLPKIEADLSFRVMPRGGYPGVGGGGGLGFAAGGQAGVEEAKDAREFGLGVDGGPLTADEFEDEKEMEEVXXXXXXXXXXXXXXXXXENDRAIWRETFGEEMPAEVSSGSWIDMDAVRD 682
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19236.6153.1 vs. uniprot
Match: D8LG47_ECTSI (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG47_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 4.650e-54
Identity = 125/156 (80.13%), Postives = 125/156 (80.13%), Query Frame = 1 
Query: 1063 ARKSVLGGVVERAPSVPAPMEVRVGGRAQGGAGAVEGHLPKIEADLSFRVMPRGGYPGVGGGVGPGFAGGXXGGVEEAKDAREYGLGVDGGPLTADEVEDEKEMEEXXXXXXXXXXXXXXXXADENDRAIWRETFGEEMPAEVSSGSWIDMDAVRD 1530
            ARKSVLGGVVERAPSVPAPMEVRVGGRAQGGAGAVEGHLPKIEADLSFRVMPRGGYPGVGG         XX  VEEAK AREYGLGVDGGPLTADEVEDEK    XXXXXX              D AIWRETFGEEMPAEVSSGSWIDMDAVRD
Sbjct:  272 ARKSVLGGVVERAPSVPAPMEVRVGGRAQGGAGAVEGHLPKIEADLSFRVMPRGGYPGVGGXXXXXXXXXXXXXVEEAKGAREYGLGVDGGPLTADEVEDEKXXXXXXXXXX--------------DGAIWRETFGEEMPAEVSSGSWIDMDAVRD 413
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19236.6153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2G0_9PHAE1.050e-12871.72RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
D8LG47_ECTSI4.650e-5480.13RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19236contigEcto-sp13_S_contig19236:1382..3340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1530
Hectar predicted targeting categoryother localisation
Exons3
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462979.0089257-UTR-Ecto-sp13_S_contig19236:1381..15111681462979.0089257-UTR-Ecto-sp13_S_contig19236:1381..1511Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19236 1382..1511 +
1681462979.0267103-UTR-Ecto-sp13_S_contig19236:1877..19011681462979.0267103-UTR-Ecto-sp13_S_contig19236:1877..1901Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19236 1878..1901 +
1681462979.0351176-UTR-Ecto-sp13_S_contig19236:2117..30421681462979.0351176-UTR-Ecto-sp13_S_contig19236:2117..3042Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19236 2118..3042 +
1681462979.0435443-UTR-Ecto-sp13_S_contig19236:3255..33401681462979.0435443-UTR-Ecto-sp13_S_contig19236:3255..3340Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19236 3256..3340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462979.0181236-CDS-Ecto-sp13_S_contig19236:1511..18771681462979.0181236-CDS-Ecto-sp13_S_contig19236:1511..1877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19236 1512..1877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19236.6153.1prot_Ecto-sp13_S_contig19236.6153.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19236 1512..1877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19236.6153.1

>prot_Ecto-sp13_S_contig19236.6153.1 ID=prot_Ecto-sp13_S_contig19236.6153.1|Name=mRNA_Ecto-sp13_S_contig19236.6153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MAPQELVPRRSTSGPGEETSLLRRSAYLLLLLLQQQQVVLLPITPARVPV
STVRREDRRRAQVKKRRPLLFRRSNLPMERPPPLPRPRFLTKKETRRAWE
RRQRQATSPPAAMVVEKAWRQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig19236:1382..3340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19236.6153.1 ID=mRNA_Ecto-sp13_S_contig19236.6153.1|Name=mRNA_Ecto-sp13_S_contig19236.6153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1959bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19236:1382..3340+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGACGAAGGTATTCATGTCCGCCATCCCACCGACGCCTCCGTACACGAG
GGAAAACCTCGTCCGTCTCGCCTGCCCCTCACCGGCCCCTTCCTCCGCGG
AAGGATCCACCAGCGTCAACGGCGACGGGCATGGCGCCGCAGGAGCTGGT
GCCAAGAAGGTCTACAAGCGGGCCCGGCGAAGAGACCTCCCTCCTCCGAA
GGAGCGCCTACCTGCTGCTGCTGCTGCTGCAGCAGCAGCAGGTAGTGTTG
TTGCCGATAACGCCGGCGAGGGTGCCGGTGTCGACCGTCAGGAGGGAGGA
TCGGAGAAGAGCGCAGGTGAAGAAGCGCCGGCCCTTGCTGTTCCGGAGAA
GCAACCTGCCGATGGAGAGGCCGCCGCCTCTTCCCCGGCCGCGGTTTCTG
ACAAAGAAGGAGACGAGGAGGGCGTGGGAACGCCGGCAGAGGCAAGCGAC
ATCGCCTCCGGCAGCAATGGTCGTGGAGAAGGCGTGGCGACAGTGACGGC
AACGCCCGGAGAGGGCGCCGGTGACGACGCAAGCGGCGAGGACGCTACGG
CGTCCGTCCGAGCCGCGCTGAAAAGCGTGTCAATTTCTGACGAGGAGAAG
CATGCTCGTAGTGCGGTGGCATCTTCTGCTCCTGTGGTTGCTGCTGCTGC
TACTGCTGCTGCTGCTGCGTCGCCAGCACCACCTGTGTCGGATGTTGCGG
GTGTTCGAAAAGCGACAAGCACAACGGCGGATAAAGTACCGGCGCCGGCA
CCCACACCATCAAGGACCGCGTGGGAGAGCGTAAGGTTCAGTCGACCAAG
CGGCAGCAGCAGCGGCGGCGGCGATTTTTGCTCGGCTTCGGTTGTGTCGC
GACACGCCTCCTTGGCCGCCGCGGTAGCCGATACCGCCACGATGGACGCG
GACAAACCTTCCCCCTCAGGAGGAACTGTTCCCGAAGCGAGATCCAGAGA
AGTCAAGTCCTCCTCCTTCTCCTCCTCCGCCACTAACACCCCTGGCGAAA
GCGCGAAGCCGCGGACGGCGGATTCATCCCAGTCGCCGTCGCCGACCCGG
CACAGGCGTGTTTCCTTCGCCGAAGGTACCAAAGAGAGCCCCCAACCGAA
CGCGTCTTCGCCCCCGGTGCCTTCCGCCCGCGGCAGGGCCGCCGCTGCAA
AACAGGCGAGGGCGGCGGCGGTGGCGGCAGGCACCGGGCCGGGCAGGCGA
GGAGGACGCGGACGCGGCTCGGGTAAAGCTCCATCTGGCAGAGGCCGAGG
CGGAAAGCCGGCGCCGGCGCCGGCGCCGGCGAGGAAGAGCGTGCTGGGAG
GGGTCGTCGAGCGCGCCCCCTCGGTGCCTGCTCCGATGGAGGTGAGGGTG
GGCGGCCGCGCACAGGGCGGCGCGGGGGCGGTGGAGGGACACCTCCCGAA
GATCGAGGCGGACCTGTCCTTTCGAGTCATGCCTCGCGGGGGCTACCCCG
GGGTCGGCGGCGGCGTTGGTCCAGGTTTCGCAGGCGGCGGGGGGGGGGGG
GTGGAGGAGGCGAAAGATGCCCGAGAGTACGGGCTTGGCGTGGACGGAGG
ACCCTTGACGGCGGATGAGGTGGAGGACGAAAAGGAGATGGAAGAAGACG
AAGAAGGAGATGGGGCAGAGGGCGAGGAGCACAGTGAAGACGACGCGGAC
GAGAACGATAGGTCTGTGTTGTTGTCGCCGTGCTTGGGCTACTTTATGCT
ATCGTTAGAGCATGATGAATGTGCTTTGTGTCGGGACAGAGGAGGAAGCC
TCCCTTCTCCTTCCGACATATTTCTCTCTTTCCTTTCATGTCGTGTTCCG
GACCACGTTCTACGCCGCGCAATATGTTAATCGTTGCTATTCATTACGTG
TGTCGTGTTGTCCAACGAAAAAAGGGCCATCTGGCGCGAGACCTTCGGAG
AAGAGATGCCTGCCGAGGTGTCGTCGGGGTCATGGATAGATATGGACGCA
GTCCGAGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19236:1382..3340+

>mRNA_Ecto-sp13_S_contig19236.6153.1 ID=mRNA_Ecto-sp13_S_contig19236.6153.1|Name=mRNA_Ecto-sp13_S_contig19236.6153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19236:1382..3340+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCCGCAGGAGCTGGTGCCAAGAAGGTCTACAAGCGGGCCCGGCGA
AGAGACCTCCCTCCTCCGAAGGAGCGCCTACCTGCTGCTGCTGCTGCTGC
AGCAGCAGCAGGTAGTGTTGTTGCCGATAACGCCGGCGAGGGTGCCGGTG
TCGACCGTCAGGAGGGAGGATCGGAGAAGAGCGCAGGTGAAGAAGCGCCG
GCCCTTGCTGTTCCGGAGAAGCAACCTGCCGATGGAGAGGCCGCCGCCTC
TTCCCCGGCCGCGGTTTCTGACAAAGAAGGAGACGAGGAGGGCGTGGGAA
CGCCGGCAGAGGCAAGCGACATCGCCTCCGGCAGCAATGGTCGTGGAGAA
GGCGTGGCGACAGTGA
back to top