prot_Ecto-sp13_S_contig1903.6040.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1903.6040.1
Unique Nameprot_Ecto-sp13_S_contig1903.6040.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length57
Homology
BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: D7FH06_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH06_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.070e-27
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0
Query:    1 QGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 56
            +GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:  356 EGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 411          
BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A6H5JYW0_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW0_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.610e-27
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0
Query:    1 QGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 56
            +GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:  465 EGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 520          
BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A4D9D037_9STRA (SRP40_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D037_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.820e-18
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0
Query:    2 GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFD 52
            GTFG GGYG KASEKL  VRGKDFRHEKTKKKRGSYRGG IS+ S+S+K+D
Sbjct:  421 GTFGSGGYGAKASEKLMTVRGKDFRHEKTKKKRGSYRGGTISLESHSIKYD 471          
BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A7S3Y1Y8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y8_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 1.350e-16
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 0
Query:    1 QGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 55
            +GTFG  GYG KASE L KVRGKDFRHEKTKKKRG+YRGG+I++ S S+KF +SD
Sbjct:  187 EGTFGGDGYGAKASEVLLKVRGKDFRHEKTKKKRGNYRGGQITLASNSIKFANSD 241          
BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A061RD47_9CHLO (SRP40_C domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RD47_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 1.650e-15
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 0
Query:    2 GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 55
            GTFG  G+G+KA E L KVRGKDFRHEKTKKKRGSYRGG+I + S S KF+  D
Sbjct:  227 GTFGAQGWGYKAQEVLGKVRGKDFRHEKTKKKRGSYRGGKIELGSNSFKFESDD 280          
BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A7S3QVY0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QVY0_DUNTE)

HSP 1 Score: 77.8 bits (190), Expect = 1.820e-15
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    1 QGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 55
            +GTFGQ G+GFKA + L  VRGKDFRHEKTKKKRG+YRGG I  +S+S KFD  D
Sbjct:  326 EGTFGQDGWGFKAQQALGAVRGKDFRHEKTKKKRGTYRGGVIDGSSHSYKFDSDD 380          
BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: E1ZIP2_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZIP2_CHLVA)

HSP 1 Score: 77.0 bits (188), Expect = 4.360e-15
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 0
Query:    1 QGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSY-SVKFDDS 54
            +GTFGQ G+G+KA E L KVRGKDFRHEKTKKKRGSY+GGEI+ N+  S KFD+S
Sbjct:  418 EGTFGQDGWGWKAQEVLGKVRGKDFRHEKTKKKRGSYKGGEINPNATCSYKFDNS 472          
BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A7S1T5X8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T5X8_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 4.870e-15
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 0
Query:    2 GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEI-SMNSYSVKFDDSD 55
            GTFGQ G+G+KA E L KVRGKDFRHEKTKKKRG+Y+GG+I +M S S+KF+  D
Sbjct:  234 GTFGQDGWGYKAQEVLGKVRGKDFRHEKTKKKRGTYKGGKIDNMGSNSIKFESDD 288          
BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A2P6V2P2_9CHLO (Nucleolar and coiled-body phospho 1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V2P2_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 5.940e-15
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0
Query:    2 GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSY-SVKFDDSD 55
            GTFGQ G+G+KA E L KVRGKDFRHEKTKKKRGSY+GGEI  ++  S KF+DSD
Sbjct:  269 GTFGQNGWGWKAQEVLGKVRGKDFRHEKTKKKRGSYKGGEIDPHARCSYKFEDSD 323          
BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A482REN1_9ARCH (SRP40_C domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482REN1_9ARCH)

HSP 1 Score: 71.6 bits (174), Expect = 7.660e-15
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 0
Query:    2 GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSY-SVKFD 52
            G FG  G+G+KA+E LSKV+GKDFRHEKTKKKRG+YRGG I MN+  S+K D
Sbjct:   56 GAFGAAGWGYKANEILSKVKGKDFRHEKTKKKRGTYRGGAIDMNAVNSIKLD 107          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH06_ECTSI1.070e-2798.21LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JYW0_9PHAE2.610e-2798.21LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A4D9D037_9STRA7.820e-1880.39SRP40_C domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S3Y1Y8_HETAK1.350e-1672.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A061RD47_9CHLO1.650e-1570.37SRP40_C domain-containing protein n=1 Tax=Tetrasel... [more]
A0A7S3QVY0_DUNTE1.820e-1569.09Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
E1ZIP2_CHLVA4.360e-1572.73Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S1T5X8_9CHLO4.870e-1569.09Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A2P6V2P2_9CHLO5.940e-1572.73Nucleolar and coiled-body phospho 1 n=1 Tax=Micrac... [more]
A0A482REN1_9ARCH7.660e-1569.23SRP40_C domain-containing protein n=1 Tax=archaeon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007718Srp40, C-terminalPFAMPF05022SRP40_Ccoord: 5..51
e-value: 1.7E-19
score: 70.4
IPR039191Srp40/Nopp140PANTHERPTHR23216NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1coord: 6..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1903contigEcto-sp13_S_contig1903:442..612 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1903.6040.1mRNA_Ecto-sp13_S_contig1903.6040.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1903 442..612 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1903.6040.1 ID=prot_Ecto-sp13_S_contig1903.6040.1|Name=mRNA_Ecto-sp13_S_contig1903.6040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
QGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVK
FDDSDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007718Srp40_C
IPR039191Srp40/Nopp140