mRNA_Ecto-sp13_S_contig1903.6040.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1903.6040.1
Unique NamemRNA_Ecto-sp13_S_contig1903.6040.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: D7FH06_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH06_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.070e-27
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 QGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 168
            +GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:  356 EGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 411
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BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A6H5JYW0_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW0_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.610e-27
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 QGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 168
            +GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:  465 EGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 520
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BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A4D9D037_9STRA (SRP40_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D037_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.820e-18
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFD 156
            GTFG GGYG KASEKL  VRGKDFRHEKTKKKRGSYRGG IS+ S+S+K+D
Sbjct:  421 GTFGSGGYGAKASEKLMTVRGKDFRHEKTKKKRGSYRGGTISLESHSIKYD 471
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BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A7S3Y1Y8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y8_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 1.350e-16
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 QGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 165
            +GTFG  GYG KASE L KVRGKDFRHEKTKKKRG+YRGG+I++ S S+KF +SD
Sbjct:  187 EGTFGGDGYGAKASEVLLKVRGKDFRHEKTKKKRGNYRGGQITLASNSIKFANSD 241
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BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A061RD47_9CHLO (SRP40_C domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RD47_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 1.650e-15
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    4 GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 165
            GTFG  G+G+KA E L KVRGKDFRHEKTKKKRGSYRGG+I + S S KF+  D
Sbjct:  227 GTFGAQGWGYKAQEVLGKVRGKDFRHEKTKKKRGSYRGGKIELGSNSFKFESDD 280
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BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A7S3QVY0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QVY0_DUNTE)

HSP 1 Score: 77.8 bits (190), Expect = 1.820e-15
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 QGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 165
            +GTFGQ G+GFKA + L  VRGKDFRHEKTKKKRG+YRGG I  +S+S KFD  D
Sbjct:  326 EGTFGQDGWGFKAQQALGAVRGKDFRHEKTKKKRGTYRGGVIDGSSHSYKFDSDD 380
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BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: E1ZIP2_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZIP2_CHLVA)

HSP 1 Score: 77.0 bits (188), Expect = 4.360e-15
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 QGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSY-SVKFDDS 162
            +GTFGQ G+G+KA E L KVRGKDFRHEKTKKKRGSY+GGEI+ N+  S KFD+S
Sbjct:  418 EGTFGQDGWGWKAQEVLGKVRGKDFRHEKTKKKRGSYKGGEINPNATCSYKFDNS 472
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BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A7S1T5X8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T5X8_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 4.870e-15
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    4 GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEI-SMNSYSVKFDDSD 165
            GTFGQ G+G+KA E L KVRGKDFRHEKTKKKRG+Y+GG+I +M S S+KF+  D
Sbjct:  234 GTFGQDGWGYKAQEVLGKVRGKDFRHEKTKKKRGTYKGGKIDNMGSNSIKFESDD 288
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BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A2P6V2P2_9CHLO (Nucleolar and coiled-body phospho 1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V2P2_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 5.940e-15
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    4 GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSY-SVKFDDSD 165
            GTFGQ G+G+KA E L KVRGKDFRHEKTKKKRGSY+GGEI  ++  S KF+DSD
Sbjct:  269 GTFGQNGWGWKAQEVLGKVRGKDFRHEKTKKKRGSYKGGEIDPHARCSYKFEDSD 323
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BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Match: A0A482REN1_9ARCH (SRP40_C domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482REN1_9ARCH)

HSP 1 Score: 71.6 bits (174), Expect = 7.660e-15
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    4 GTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSY-SVKFD 156
            G FG  G+G+KA+E LSKV+GKDFRHEKTKKKRG+YRGG I MN+  S+K D
Sbjct:   56 GAFGAAGWGYKANEILSKVKGKDFRHEKTKKKRGTYRGGAIDMNAVNSIKLD 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1903.6040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH06_ECTSI1.070e-2798.21LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JYW0_9PHAE2.610e-2798.21LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A4D9D037_9STRA7.820e-1880.39SRP40_C domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S3Y1Y8_HETAK1.350e-1672.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A061RD47_9CHLO1.650e-1570.37SRP40_C domain-containing protein n=1 Tax=Tetrasel... [more]
A0A7S3QVY0_DUNTE1.820e-1569.09Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
E1ZIP2_CHLVA4.360e-1572.73Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S1T5X8_9CHLO4.870e-1569.09Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A2P6V2P2_9CHLO5.940e-1572.73Nucleolar and coiled-body phospho 1 n=1 Tax=Micrac... [more]
A0A482REN1_9ARCH7.660e-1569.23SRP40_C domain-containing protein n=1 Tax=archaeon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1903contigEcto-sp13_S_contig1903:442..612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score112.8
Seed ortholog evalue5.1e-23
Seed eggNOG ortholog2880.D7FH06
Preferred nameSRP40
Model size171
KEGG koko:K10771,ko:K11294
KEGG Pathwayko03410,ko05130,map03410,map05130
KEGG ModuleM00296
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016888,GO:0016893,GO:0016895,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046907,GO:0050896,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0052720,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360
Exons1
EggNOG free text desc.RNA polymerase I core binding
EggNOG OGsKOG2992@1,KOG2992@2759
EC4.2.99.18
Cds size171
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462970.571978-CDS-Ecto-sp13_S_contig1903:441..6121681462970.571978-CDS-Ecto-sp13_S_contig1903:441..612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1903 442..612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1903.6040.1prot_Ecto-sp13_S_contig1903.6040.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1903 442..612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1903.6040.1

>prot_Ecto-sp13_S_contig1903.6040.1 ID=prot_Ecto-sp13_S_contig1903.6040.1|Name=mRNA_Ecto-sp13_S_contig1903.6040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
QGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVK
FDDSDG*
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mRNA from alignment at Ecto-sp13_S_contig1903:442..612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1903.6040.1 ID=mRNA_Ecto-sp13_S_contig1903.6040.1|Name=mRNA_Ecto-sp13_S_contig1903.6040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1903:442..612+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCACGTTTGGACAAGGCGGGTACGGGTTCAAGGCGAGCGAGAAGCT
GTCGAAGGTGCGAGGGAAGGACTTCAGACACGAGAAGACCAAGAAGAAGC
GCGGCAGCTACCGGGGCGGCGAGATTTCGATGAACAGCTACTCGGTCAAG
TTCGACGATAGCGACGGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1903:442..612+

>mRNA_Ecto-sp13_S_contig1903.6040.1 ID=mRNA_Ecto-sp13_S_contig1903.6040.1|Name=mRNA_Ecto-sp13_S_contig1903.6040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1903:442..612+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCACGTTTGGACAAGGCGGGTACGGGTTCAAGGCGAGCGAGAAGCT
GTCGAAGGTGCGAGGGAAGGACTTCAGACACGAGAAGACCAAGAAGAAGC
GCGGCAGCTACCGGGGCGGCGAGATTTCGATGAACAGCTACTCGGTCAAG
TTCGACGATAGCGACGGTTAA
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