prot_Ecto-sp13_S_contig18837.5936.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18837.5936.1
Unique Nameprot_Ecto-sp13_S_contig18837.5936.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length151
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18837.5936.1 vs. uniprot
Match: D7FS47_ECTSI (Major facilitator superfamily sugar transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS47_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 1.140e-84
Identity = 136/151 (90.07%), Postives = 140/151 (92.72%), Query Frame = 0 
Query:    1 MITSPKCATTNRTRLIPSLALFGTFFLLGVFISSLGPAIAPLSHDLDIADVSLGAGVALRGLGYLLGSWLSSVQLPIGALNDRMTRLGAATAGIGLLAIAIDVAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQVGTHAC 151
            MITS KCATTN TRL+PSLALFG+FFLLGVFIS LGPAIAPLSHDL +ADVSLGAGVALRGLGYLLGSWLSSVQLPIGALNDRM RLGAATAGIGL A+AID AQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGA VAPWMQ G H C
Sbjct:    1 MITSAKCATTNGTRLLPSLALFGSFFLLGVFISCLGPAIAPLSHDLGVADVSLGAGVALRGLGYLLGSWLSSVQLPIGALNDRMARLGAATAGIGLFAMAIDAAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGAGVAPWMQ-GLHFC 150
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BLAST of mRNA_Ecto-sp13_S_contig18837.5936.1 vs. uniprot
Match: A0A6H5J9W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.500e-28
Identity = 62/68 (91.18%), Postives = 62/68 (91.18%), Query Frame = 0 
Query:   84 MTRLGAATAGIGLLAIAIDVAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQVGTHAC 151
            M RLGAATAGIGLLAIAID AQTLWAV ALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQ G H C
Sbjct:    1 MARLGAATAGIGLLAIAIDAAQTLWAVSALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQ-GLHFC 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18837.5936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS47_ECTSI1.140e-8490.07Major facilitator superfamily sugar transporter n=... [more]
A0A6H5J9W6_9PHAE1.500e-2891.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1250.20coord: 13..144
e-value: 2.1E-7
score: 32.3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 111..151
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..61
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..80
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..42
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 81..86
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 87..110
NoneNo IPR availableTMHMMTMhelixcoord: 87..109
NoneNo IPR availableTMHMMTMhelixcoord: 21..43
NoneNo IPR availableTMHMMTMhelixcoord: 58..80
IPR036259MFS transporter superfamilySUPERFAMILY103473MFS general substrate transportercoord: 9..135

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18837contigEcto-sp13_S_contig18837:1219..3294 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18837.5936.1mRNA_Ecto-sp13_S_contig18837.5936.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18837 1207..3294 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18837.5936.1 ID=prot_Ecto-sp13_S_contig18837.5936.1|Name=mRNA_Ecto-sp13_S_contig18837.5936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
MITSPKCATTNRTRLIPSLALFGTFFLLGVFISSLGPAIAPLSHDLDIAD
VSLGAGVALRGLGYLLGSWLSSVQLPIGALNDRMTRLGAATAGIGLLAIA
IDVAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQVGTHA
C
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf