mRNA_Ecto-sp13_S_contig18837.5936.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18837.5936.1
Unique NamemRNA_Ecto-sp13_S_contig18837.5936.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18837.5936.1 vs. uniprot
Match: D7FS47_ECTSI (Major facilitator superfamily sugar transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS47_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 1.900e-84
Identity = 136/151 (90.07%), Postives = 140/151 (92.72%), Query Frame = 1 
Query:   13 MITSPKCATTNRTRLIPSLALFGTFFLLGVFISSLGPAIAPLSHDLDIADVSLGAGVALRGLGYLLGSWLSSVQLPIGALNDRMTRLGAATAGIGLLAIAIDVAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQVGTHAC 465
            MITS KCATTN TRL+PSLALFG+FFLLGVFIS LGPAIAPLSHDL +ADVSLGAGVALRGLGYLLGSWLSSVQLPIGALNDRM RLGAATAGIGL A+AID AQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGA VAPWMQ G H C
Sbjct:    1 MITSAKCATTNGTRLLPSLALFGSFFLLGVFISCLGPAIAPLSHDLGVADVSLGAGVALRGLGYLLGSWLSSVQLPIGALNDRMARLGAATAGIGLFAMAIDAAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGAGVAPWMQ-GLHFC 150
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BLAST of mRNA_Ecto-sp13_S_contig18837.5936.1 vs. uniprot
Match: A0A6H5J9W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.730e-28
Identity = 62/68 (91.18%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:  262 MTRLGAATAGIGLLAIAIDVAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQVGTHAC 465
            M RLGAATAGIGLLAIAID AQTLWAV ALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQ G H C
Sbjct:    1 MARLGAATAGIGLLAIAIDAAQTLWAVSALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQ-GLHFC 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18837.5936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS47_ECTSI1.900e-8490.07Major facilitator superfamily sugar transporter n=... [more]
A0A6H5J9W6_9PHAE1.730e-2891.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18837contigEcto-sp13_S_contig18837:1207..3294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size465
Hectar predicted targeting categorysignal anchor
Exons3
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462962.6702814-UTR-Ecto-sp13_S_contig18837:1206..12181681462962.6702814-UTR-Ecto-sp13_S_contig18837:1206..1218Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18837 1207..1218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462962.6876192-CDS-Ecto-sp13_S_contig18837:1218..14391681462962.6876192-CDS-Ecto-sp13_S_contig18837:1218..1439Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18837 1219..1439 +
1681462962.6980093-CDS-Ecto-sp13_S_contig18837:2803..29331681462962.6980093-CDS-Ecto-sp13_S_contig18837:2803..2933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18837 2804..2933 +
1681462962.7080681-CDS-Ecto-sp13_S_contig18837:3192..32941681462962.7080681-CDS-Ecto-sp13_S_contig18837:3192..3294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18837 3193..3294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18837.5936.1prot_Ecto-sp13_S_contig18837.5936.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18837 1219..3294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18837.5936.1

>prot_Ecto-sp13_S_contig18837.5936.1 ID=prot_Ecto-sp13_S_contig18837.5936.1|Name=mRNA_Ecto-sp13_S_contig18837.5936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
MITSPKCATTNRTRLIPSLALFGTFFLLGVFISSLGPAIAPLSHDLDIAD
VSLGAGVALRGLGYLLGSWLSSVQLPIGALNDRMTRLGAATAGIGLLAIA
IDVAQTLWAVCALCFGQGLCGGSIDAIANAAISFVHGADVAPWMQVGTHA
C
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mRNA from alignment at Ecto-sp13_S_contig18837:1207..3294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18837.5936.1 ID=mRNA_Ecto-sp13_S_contig18837.5936.1|Name=mRNA_Ecto-sp13_S_contig18837.5936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2088bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18837:1207..3294+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTACCTCTGTCATGATCACTAGCCCGAAATGCGCAACCACCAACCGTAC
CCGACTGATTCCCTCTTTAGCCCTGTTCGGGACCTTTTTCTTGCTTGGGG
TTTTCATCAGCTCCCTTGGGCCGGCAATCGCTCCGCTGAGCCATGACCTC
GATATTGCAGATGTCTCCCTTGGGGCCGGAGTGGCTCTCCGCGGGCTCGG
TTATCTCCTGGGCTCGTGGCTTTCGTCTGTTCAGTGAGTACGATCCACTG
CTGCTGCTGCTGCTGTTGTACGGCGGAATAGCGGCTAACGGCGTTGTGAA
AAGTTGTATGTGTAGATCCGGCCGCATAGTAGCCTCCTGTTGTTGTCTCA
GAAATCCAAGATGGATCGGCACCGGTTGAATGTTGCTTCACAGAGCCGAT
ACGGACATTGAATTGTGCAAACCCTTGAGTTTAGTCGTCGCGTGGTTGAA
CCGTGCTGACTTCTCGTTGACATAATGCGATGCTGTACGATGCGCGTACA
GCAAAAAAGCTAACACTTTCGTCGATTGTAGCTCTCTATTTTCCCGCAAA
GAGGGCTTTACCCGGAGCCGGCGGGTTTATTTGGAAGCTGGCGGACAATC
GAGGTGCCAAATACTTCTTACTGGGCGCCGCGGGCCCACGTTCACATCTC
GTTCGTTGCTTTTTGTACGGTGGCGACTTTGACGATGAATCGGTTGCCCT
ATAGCAGTCGACATCCGTCCAAGATGAAGGTGTTTCACCGTAAACCGTCA
AGTTTAACCGTCGGTGCATTGGACCGGGTTGTTTCTGGTCGTCGGCTCGT
TGGGCAGCAGTGTTGTTCGTCCACGTACGGCCCAACGGCATTCGTAATTT
GTAATTTTGCTTTTGACACGTTGCTCAGTGAGGCGGGTTTACTGGGAAAT
CGTCGGAGAAAACATAGGAAGGGCGGTCAATTAGTCACTGCACATCGCGT
GCGTGACTTTCGCAACCACCGCGTTGTGTACTTCGGGGGCATGTTGAGGT
TGACAGTAGTTTGGTCACGTGCACCTGCCAAGTAGATGTTCTACGTTTTA
CCTTCACGGAAATGCTTGAATCGCACAGGACATGTCCTTCCTCAGTCACT
TGAAAACTCCTTCGACACGCTCCATGGAAGTCATCGGCAGATGACGGTAT
GTACACAGGCGCCCGCCCTCAAGAAGCTCTCGTTTTCGACGAGGTTGGGG
TTCTTAGACCCAGGGGTTTACTGCAAGTTGGCCGCTGTATCGTTTTTGGT
GCAGGGGCTCTTAGCGGGTCTCAATAATGGTGCCCCAAGTTTTAGGTCTT
GAGCTTCTCGAGCCTCAACTTTTTTACGACCAAGTTCTTACGTCGGGCGC
TATGTAGCTGCACCCTAAAAGCGTCTTCACCTCTCCTGCGCGCCGGTTTG
TGAGTGGGAGAAAGGTGAAAATGCTCACATCAGCGGCAAAAAAACGTCCG
CGGAAGGAGTGTTGCGTTTCGCGGGATAATCGAGTTTTCCCTTCTCAGAT
GGCCCATGCTGTAAACTTCCATGTGTACTCATTGCACCGAGTGTTTTGGG
GTGTTCCTCTACCCTTACCTTCCGCTGCTGCTGTGGTATGCTTGCAGGCT
ACCCATCGGGGCGCTGAACGACCGGATGACTCGCCTCGGCGCCGCCACGG
CCGGCATCGGATTGCTCGCAATAGCGATCGACGTGGCGCAGACGTTGTGG
GCGGTTTGCGCTCTCTGCTTCGGCCAGGTGGGTGACTGCAGCAGTAGCTT
ACGCCCGGCACGCAGCAGTAGATGGATGATACTCGTGACGTGGGGCGGGA
TGGATCTTGTCCCGTGACCGTGAAAACCTGTTGTGTTCCTGCACCTTGCT
ATTCAGTGGTTGTTTGCTTGCTGCTTCCTGGGGGCGACACGACTTCGTGC
GTTGTTCGTGTAGGGCATACGCCTAAGGCACATTCTCGGGCTGTTTCGCC
CACGTCTGTTTTCGGTTTTGCAACAAAGGAAAACAGGGGCTCTGCGGCGG
GTCCATCGATGCCATCGCCAACGCCGCCATCTCCTTTGTGCATGGAGCCG
ACGTCGCTCCTTGGATGCAGGTAGGTACGCACGCATGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18837:1207..3294+

>mRNA_Ecto-sp13_S_contig18837.5936.1 ID=mRNA_Ecto-sp13_S_contig18837.5936.1|Name=mRNA_Ecto-sp13_S_contig18837.5936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18837:1207..3294+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCACTAGCCCGAAATGCGCAACCACCAACCGTACCCGACTGATTCC
CTCTTTAGCCCTGTTCGGGACCTTTTTCTTGCTTGGGGTTTTCATCAGCT
CCCTTGGGCCGGCAATCGCTCCGCTGAGCCATGACCTCGATATTGCAGAT
GTCTCCCTTGGGGCCGGAGTGGCTCTCCGCGGGCTCGGTTATCTCCTGGG
CTCGTGGCTTTCGTCTGTTCAGCTACCCATCGGGGCGCTGAACGACCGGA
TGACTCGCCTCGGCGCCGCCACGGCCGGCATCGGATTGCTCGCAATAGCG
ATCGACGTGGCGCAGACGTTGTGGGCGGTTTGCGCTCTCTGCTTCGGCCA
GGGGCTCTGCGGCGGGTCCATCGATGCCATCGCCAACGCCGCCATCTCCT
TTGTGCATGGAGCCGACGTCGCTCCTTGGATGCAGGTAGGTACGCACGCA
TGC
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