prot_Ecto-sp13_S_contig1879.5920.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1879.5920.1
Unique Nameprot_Ecto-sp13_S_contig1879.5920.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length570
Homology
BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: A0A6H5JER8_9PHAE (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER8_9PHAE)

HSP 1 Score: 445 bits (1144), Expect = 8.700e-147
Identity = 431/591 (72.93%), Postives = 434/591 (73.43%), Query Frame = 0
Query:   16 RGRQKWSQQPQPAEGPNARQQHHVGAAATTASPAWATAAPRVSTPXXXXXXXXXXTRPLCRPPADPRLRSSVHPRRGAAAGAVLRPPADGGVPAAAAGSKPGPPCRAGSLAAARADERAPAGPRRRAADAGALGAGGAGAVADTELLAAAPTGAVCLPAPCPAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------TPAVSQGGYQPPPPVPSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSLYXXXXXXXAATSPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEPYTGLRSTFSSSPPVPAPAPYSPPAPAAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAPSKAPGAVSDPAAMGEVQQRETAVRGMLHRDPGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKVLEKGGPGCVMRTLVSRQTV 569
            R RQKWSQQPQPAE PNARQ HHVGAAATTASPAWATAAP VSTP          TRP+C PPADPRLRSSVHPRR AA GAVLRPPADGGVPAAAAGSKP            RADERAPAGP RR ADAGAL AGGAGAVADTE LAAAP GA+CLPAP PAGGA                   XX                                               TPA SQGGYQPPPPVPS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXAATSPPS XXXXXXXXXXXXXXXXXXXX                XXXXXX  AAEPYTGLRSTFSS                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XX      AGAPSK PGAVSDPAAMGEVQQRETAVRGMLHRDPGGALR+SLEDPPVFCKDEAVKAKS ECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKVLEKGGPGCVMRTLVSRQTV
Sbjct:   27 RKRQKWSQQPQPAERPNARQHHHVGAAATTASPAWATAAPWVSTPATPRFSTTAATRPVCCPPADPRLRSSVHPRRSAATGAVLRPPADGGVPAAAAGSKPXXXXXXXXXXXXRADERAPAGPWRRPADAGALDAGGAGAVADTEPLAAAPPGAICLPAPRPAGGAKLSTTAPPGGPEVPAAGPAXXGAELPAPCTAGCAEVPAAAAAATXXXXXXXXXXXXXXXXXXXXXXAGTPAASQGGYQPPPPVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATSPPSSXXXXXXXXXXXXXXXXXXXXAAPTVALRKVTPVAQPXXXXXXQPAAEPYTGLRSTFSSX---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQXXAVGGAGAGAPSKVPGAVSDPAAMGEVQQRETAVRGMLHRDPGGALRRSLEDPPVFCKDEAVKAKSMECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKVLEKGGPGCVMRTLVSRQTV 602          
BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: D8LCU1_ECTSI (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU1_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 7.090e-80
Identity = 309/340 (90.88%), Postives = 312/340 (91.76%), Query Frame = 0
Query:  214 PAVSQGGYQPPPPVPSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ASSLYXXXXXXXAATSPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEPYTGLRSTFSSSPPVPAPAPYSPPAPAAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAPSKAPGAVSDPAAMGEVQQRETAVRGMLHRDPGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKVLE 552
            PA  QGGYQPPPPVPSAS         XXXXXXXXXXXXXX       XXXX A   YXXXXXXX ATSPP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEPYTGLRSTFSSSPP PAPAPYSPP PAAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAPSK PGAVSDPAAMGEVQQRETAVRGMLHRDPGGALRKSLEDPP+FCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDE+DVLVKYVYKGLGMPRNNGPLFKWHAK L+
Sbjct:   19 PAAIQGGYQPPPPVPSASSSYQYQPPAXXXXXXXXXXXXXXTPAAASSXXXXXAXXXYXXXXXXXXATSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEPYTGLRSTFSSSPPAPAPAPYSPPVPAAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAPSKVPGAVSDPAAMGEVQQRETAVRGMLHRDPGGALRKSLEDPPIFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEIDVLVKYVYKGLGMPRNNGPLFKWHAKSLD 358          
BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: A0A7S0JJE6_9EUKA (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJE6_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 3.080e-20
Identity = 48/120 (40.00%), Postives = 73/120 (60.83%), Query Frame = 0
Query:  447 VSDPAAMGEVQQRETAVRGMLHRDPGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNN---GPLFKWHAKVLEKGGPGCVMRTL 563
            V D   +  ++ RE+++  +L  DP  AL  SL DPP   K +AVK  S + V+  L G++E  IE  +A LSLD+ DVL+KY+Y GLG P+ +    PL KWH+ V+++ G   ++R +
Sbjct:   17 VDDGVLLASIKTRESSINPLLRTDPVKALHISLTDPPYQTKTQAVKDASCDVVVKALLGIKEADIEGVVASLSLDQCDVLMKYLYCGLGQPKRDKQYAPLLKWHSFVVKRAGQASIVRVI 136          
BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: UPI000644EC78 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644EC78)

HSP 1 Score: 96.7 bits (239), Expect = 5.440e-20
Identity = 46/130 (35.38%), Postives = 80/130 (61.54%), Query Frame = 0
Query:  442 KAPGAVSDPAAMGEVQQRETAVRGMLHRD-PGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLF-KWHAKVLEKGGPGCVMRTLVSRQTV 569
            K  G  SD     ++Q R+T +  ++++  P  AL  +L+DPP+  K +A+K ++   V+ VL+ ++E  ++ C+  L  D++D+L+KY+Y+GL    NN  +F KW+   L+K G GCV+R +  R+TV
Sbjct:   12 KTTGGKSDAEYKADIQARQTEISKLMNQGKPTDALPIALQDPPIHTKTQAIKDQNATAVIGVLSAIKEKDVDGCVNQLDDDQLDILMKYIYRGLATGDNNSAIFFKWYEATLKKSGMGCVVRAISERKTV 141          
BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: A7RWB9_NEMVE (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RWB9_NEMVE)

HSP 1 Score: 94.4 bits (233), Expect = 4.510e-19
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 0
Query:  466 MLHRDPGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNN--GPLFKWHAKVLEKGGPGCVMRTLVSRQTV 569
            ++ +  G AL+  L +PPV  K++AVK K+ + VL VLT  R ++I+N L GL+  E+D+L+KY+Y+G   P  N  G L  WH KVL  GG G ++R L  R+++
Sbjct:   45 LMSKKNGEALKAVLANPPVLSKNQAVKDKAFQLVLKVLTTTRSNEIDNALKGLTKSEVDILMKYIYRGFAQPNENSCGILLNWHEKVLAAGGLGSIIRGLTERKSI 150          
BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: A0A8J4UWY0_9MYCE (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UWY0_9MYCE)

HSP 1 Score: 93.2 bits (230), Expect = 8.070e-19
Identity = 48/126 (38.10%), Postives = 74/126 (58.73%), Query Frame = 0
Query:  445 GAVSDPAAMGEVQQRETAVRGMLHRD-PGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKVLEKGGPGCVMRTLVSRQTV 569
            G  SD     ++  RE      L+   P  AL  +L DPP++ K +A+K ++   VL +L G +E  IE  + GL+ D++DVL+KY+Y+GL    N+    KWH  VL+KGG G ++RT+  ++TV
Sbjct:   12 GGKSDAEYKSDIANRERECTKALNMGKPQDALPIALADPPIYTKTQAIKDQNATVVLSLLGGFKEKDIEASVNGLNDDQLDVLMKYIYRGLAAGENSAVFLKWHEVVLKKGGMGTIIRTISEKKTV 137          
BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: D2VCL2_NAEGR (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VCL2_NAEGR)

HSP 1 Score: 91.7 bits (226), Expect = 1.700e-18
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 0
Query:  472 GGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNG-PLFKWHAKVLEKGGPGCVMRTLVSRQTV 569
            G AL+KSLE+PP+  K++  K KS + V  VL   +E  I   +  L  DE+D+L+KY+Y+ L    N+  PLFKWH KVLEK G G ++R L  R+T+
Sbjct:   21 GDALKKSLENPPLAAKNKETKKKSADVVAKVLVNTKEADIPKIVDSLDADELDILMKYIYRCLETGDNDSKPLFKWHEKVLEKSGMGSIVRVLSERKTI 119          
BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: A0A7S0Q3G7_9EUKA (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q3G7_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 4.630e-18
Identity = 46/124 (37.10%), Postives = 71/124 (57.26%), Query Frame = 0
Query:  449 DPAAMGEVQQRETAVRGMLHRDPGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNG---PLFKWHAKVLEKGGPGCVMRTLVSRQTV 569
            D A +  ++ R++++  +L  DP  AL  SL DPP   K +AVK  S + V   L  +++  +E  +A LSLD+ DVL+KY+Y GLG  + +    PL KWH  VL++ G   ++R +   Q V
Sbjct:   20 DNAMLAAIKARDSSIAPLLRTDPVRALHLSLADPPYQTKTQAVKDASCDVVCKALLAIKDADVEPAVAALSLDQCDVLMKYIYSGLGQTKKDKQYQPLLKWHGLVLKRAGQASIVRVISEVQRV 143          
BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: D3BAU2_POLPP (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BAU2_POLPP)

HSP 1 Score: 90.9 bits (224), Expect = 6.480e-18
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 0
Query:  442 KAPGAVSDPAAMGEVQQRETAVRGMLHRDPG-GALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPR-----NNGPLFKWHAKVLEKGGPGCVMRTLVSRQTV 569
            K  G  SD     ++  RE  V   L++     AL   L DPP++ K +A+K ++   V+ VL+ ++E +I+ CL  L  D++D+L+KY+Y+GL         N    FKW+   L+K G GCV+R +  R+TV
Sbjct:   12 KTTGGKSDAEYKSDIAAREREVTKFLNQSKAVDALPVVLADPPIYTKSQAIKDQNAAIVINVLSNIKEKEIDGCLESLDADQLDILMKYIYRGLAAAATSDNTNAALFFKWYEATLKKAGMGCVVRAISERKTV 145          
BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: F1A489_DICPU (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A489_DICPU)

HSP 1 Score: 89.4 bits (220), Expect = 1.860e-17
Identity = 45/123 (36.59%), Postives = 72/123 (58.54%), Query Frame = 0
Query:  448 SDPAAMGEVQQRETAVRGMLHRD-PGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKVLEKGGPGCVMRTLVSRQTV 569
            SD     ++  RE  V   L+   P  AL  +L DPP++ K  A+K ++   VL +L   +E  +E  +  L+ +++DVL+KYVY+GL +  N+   FKWH  VL+KGG G ++R +  ++TV
Sbjct:   16 SDAEYKSDISNREKEVTKALNMGKPQDALAVALADPPIYTKTAAIKDQNATIVLNLLGSFKEKDVETSVESLNDEQLDVLMKYVYRGLAVGENSAIFFKWHECVLKKGGMGTIIRVISEKKTV 138          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JER8_9PHAE8.700e-14772.93Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
D8LCU1_ECTSI7.090e-8090.88Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A7S0JJE6_9EUKA3.080e-2040.00Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
UPI000644EC785.440e-2035.38hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A7RWB9_NEMVE4.510e-1942.45Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A8J4UWY0_9MYCE8.070e-1938.10Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
D2VCL2_NAEGR1.700e-1845.45Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A7S0Q3G7_9EUKA4.630e-1837.10Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
D3BAU2_POLPP6.480e-1835.07Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
F1A489_DICPU1.860e-1736.59Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006789Actin-related protein 2/3 complex subunit 5PFAMPF04699P16-Arccoord: 451..569
e-value: 3.1E-27
score: 95.9
IPR006789Actin-related protein 2/3 complex subunit 5PANTHERPTHR12644ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARCcoord: 452..569
IPR036743Actin-related protein 2/3 complex subunit 5 superfamilyGENE3D1.25.40.190coord: 444..569
e-value: 1.3E-28
score: 102.0
IPR036743Actin-related protein 2/3 complex subunit 5 superfamilySUPERFAMILY69103Arp2/3 complex 16 kDa subunit ARPC5coord: 451..569

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1879contigEcto-sp13_S_contig1879:5114..9680 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1879.5920.1mRNA_Ecto-sp13_S_contig1879.5920.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1879 5114..10478 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1879.5920.1 ID=prot_Ecto-sp13_S_contig1879.5920.1|Name=mRNA_Ecto-sp13_S_contig1879.5920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=570bp
HCHSQHVRTVRGANKRGRQKWSQQPQPAEGPNARQQHHVGAAATTASPAW
ATAAPRVSTPATPRFSTTAATRPLCRPPADPRLRSSVHPRRGAAAGAVLR
PPADGGVPAAAAGSKPGPPCRAGSLAAARADERAPAGPRRRAADAGALGA
GGAGAVADTELLAAAPTGAVCLPAPCPAGGAKLPTTGPPGGPELPAPCPA
GCADVPAAAAAGTPAVSQGGYQPPPPVPSASSYQYNPPAPAAPTGGYQPP
PPPTPAAGSSPPPPPASSLYGYQPPAPAATSPPSSGYQPPAPAIPSYTPA
AHIPPAAPTVALRKVTPVAQPPPPPSSQPAAEPYTGLRSTFSSSPPVPAP
APYSPPAPAAVPPPPAATYQPPAAAQYGGGGGGYNPPVAAPAPAALAPVQ
QYRSASPPSSQQGYSPPPPAATSGGGYQPPVVGGGGAGAPSKAPGAVSDP
AAMGEVQQRETAVRGMLHRDPGGALRKSLEDPPVFCKDEAVKAKSTECVL
MVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKV
LEKGGPGCVMRTLVSRQTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006789ARPC5
IPR036743ARPC5_sf