mRNA_Ecto-sp13_S_contig1879.5920.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1879.5920.1
Unique NamemRNA_Ecto-sp13_S_contig1879.5920.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: A0A6H5JER8_9PHAE (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER8_9PHAE)

HSP 1 Score: 445 bits (1144), Expect = 3.200e-143
Identity = 431/591 (72.93%), Postives = 434/591 (73.43%), Query Frame = 1 
Query:   46 RGRQKWSQQPQPAEGPNARQQHHVGAAATTASPAWATAAPRVSTPXXXXXXXXXXTRPLCRPPADPRLRSSVHPRRGAAAGAVLRPPADGGVPAAAAGSKPGPPCRAGSLAAARADERAPAGPRRRAADAGALGAGGAGAVADTELLAAAPTGAVCLPAPCPAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------TPAVSQGGYQPPPPVPSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSLYXXXXXXXAATSPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEPYTGLRSTFSSSPPVPAPAPYSPPAPAAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAPSKAPGAVSDPAAMGEVQQRETAVRGMLHRDPGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKVLEKGGPGCVMRTLVSRQTV 1707
            R RQKWSQQPQPAE PNARQ HHVGAAATTASPAWATAAP VSTP          TRP+C PPADPRLRSSVHPRR AA GAVLRPPADGGVPAAAAGSKP            RADERAPAGP RR ADAGAL AGGAGAVADTE LAAAP GA+CLPAP PAGGA                   XX                                               TPA SQGGYQPPPPVPS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXAATSPPS XXXXXXXXXXXXXXXXXXXX                XXXXXX  AAEPYTGLRSTFSS                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XX      AGAPSK PGAVSDPAAMGEVQQRETAVRGMLHRDPGGALR+SLEDPPVFCKDEAVKAKS ECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKVLEKGGPGCVMRTLVSRQTV
Sbjct:   27 RKRQKWSQQPQPAERPNARQHHHVGAAATTASPAWATAAPWVSTPATPRFSTTAATRPVCCPPADPRLRSSVHPRRSAATGAVLRPPADGGVPAAAAGSKPXXXXXXXXXXXXRADERAPAGPWRRPADAGALDAGGAGAVADTEPLAAAPPGAICLPAPRPAGGAKLSTTAPPGGPEVPAAGPAXXGAELPAPCTAGCAEVPAAAAAATXXXXXXXXXXXXXXXXXXXXXXAGTPAASQGGYQPPPPVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATSPPSSXXXXXXXXXXXXXXXXXXXXAAPTVALRKVTPVAQPXXXXXXQPAAEPYTGLRSTFSSX---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQXXAVGGAGAGAPSKVPGAVSDPAAMGEVQQRETAVRGMLHRDPGGALRRSLEDPPVFCKDEAVKAKSMECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKVLEKGGPGCVMRTLVSRQTV 602
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BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: D8LCU1_ECTSI (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU1_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 1.550e-77
Identity = 309/340 (90.88%), Postives = 312/340 (91.76%), Query Frame = 1 
Query:  640 PAVSQGGYQPPPPVPSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ASSLYXXXXXXXAATSPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEPYTGLRSTFSSSPPVPAPAPYSPPAPAAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAPSKAPGAVSDPAAMGEVQQRETAVRGMLHRDPGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKVLE 1656
            PA  QGGYQPPPPVPSAS         XXXXXXXXXXXXXX       XXXX A   YXXXXXXX ATSPP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEPYTGLRSTFSSSPP PAPAPYSPP PAAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAPSK PGAVSDPAAMGEVQQRETAVRGMLHRDPGGALRKSLEDPP+FCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDE+DVLVKYVYKGLGMPRNNGPLFKWHAK L+
Sbjct:   19 PAAIQGGYQPPPPVPSASSSYQYQPPAXXXXXXXXXXXXXXTPAAASSXXXXXAXXXYXXXXXXXXATSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEPYTGLRSTFSSSPPAPAPAPYSPPVPAAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAPSKVPGAVSDPAAMGEVQQRETAVRGMLHRDPGGALRKSLEDPPIFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEIDVLVKYVYKGLGMPRNNGPLFKWHAKSLD 358
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BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: A0A7S0JJE6_9EUKA (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJE6_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 5.000e-20
Identity = 48/120 (40.00%), Postives = 73/120 (60.83%), Query Frame = 1 
Query: 1339 VSDPAAMGEVQQRETAVRGMLHRDPGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNN---GPLFKWHAKVLEKGGPGCVMRTL 1689
            V D   +  ++ RE+++  +L  DP  AL  SL DPP   K +AVK  S + V+  L G++E  IE  +A LSLD+ DVL+KY+Y GLG P+ +    PL KWH+ V+++ G   ++R +
Sbjct:   17 VDDGVLLASIKTRESSINPLLRTDPVKALHISLTDPPYQTKTQAVKDASCDVVVKALLGIKEADIEGVVASLSLDQCDVLMKYLYCGLGQPKRDKQYAPLLKWHSFVVKRAGQASIVRVI 136
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BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: UPI000644EC78 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644EC78)

HSP 1 Score: 96.7 bits (239), Expect = 8.780e-20
Identity = 46/130 (35.38%), Postives = 80/130 (61.54%), Query Frame = 1 
Query: 1324 KAPGAVSDPAAMGEVQQRETAVRGMLHRD-PGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLF-KWHAKVLEKGGPGCVMRTLVSRQTV 1707
            K  G  SD     ++Q R+T +  ++++  P  AL  +L+DPP+  K +A+K ++   V+ VL+ ++E  ++ C+  L  D++D+L+KY+Y+GL    NN  +F KW+   L+K G GCV+R +  R+TV
Sbjct:   12 KTTGGKSDAEYKADIQARQTEISKLMNQGKPTDALPIALQDPPIHTKTQAIKDQNATAVIGVLSAIKEKDVDGCVNQLDDDQLDILMKYIYRGLATGDNNSAIFFKWYEATLKKSGMGCVVRAISERKTV 141
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BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: A7RWB9_NEMVE (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RWB9_NEMVE)

HSP 1 Score: 94.4 bits (233), Expect = 7.230e-19
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 1 
Query: 1396 MLHRDPGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNN--GPLFKWHAKVLEKGGPGCVMRTLVSRQTV 1707
            ++ +  G AL+  L +PPV  K++AVK K+ + VL VLT  R ++I+N L GL+  E+D+L+KY+Y+G   P  N  G L  WH KVL  GG G ++R L  R+++
Sbjct:   45 LMSKKNGEALKAVLANPPVLSKNQAVKDKAFQLVLKVLTTTRSNEIDNALKGLTKSEVDILMKYIYRGFAQPNENSCGILLNWHEKVLAAGGLGSIIRGLTERKSI 150
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BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: A0A8J4UWY0_9MYCE (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UWY0_9MYCE)

HSP 1 Score: 93.2 bits (230), Expect = 1.280e-18
Identity = 48/126 (38.10%), Postives = 74/126 (58.73%), Query Frame = 1 
Query: 1333 GAVSDPAAMGEVQQRETAVRGMLHRD-PGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKVLEKGGPGCVMRTLVSRQTV 1707
            G  SD     ++  RE      L+   P  AL  +L DPP++ K +A+K ++   VL +L G +E  IE  + GL+ D++DVL+KY+Y+GL    N+    KWH  VL+KGG G ++RT+  ++TV
Sbjct:   12 GGKSDAEYKSDIANRERECTKALNMGKPQDALPIALADPPIYTKTQAIKDQNATVVLSLLGGFKEKDIEASVNGLNDDQLDVLMKYIYRGLAAGENSAVFLKWHEVVLKKGGMGTIIRTISEKKTV 137
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BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: D2VCL2_NAEGR (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VCL2_NAEGR)

HSP 1 Score: 91.7 bits (226), Expect = 2.650e-18
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 1 
Query: 1414 GGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNG-PLFKWHAKVLEKGGPGCVMRTLVSRQTV 1707
            G AL+KSLE+PP+  K++  K KS + V  VL   +E  I   +  L  DE+D+L+KY+Y+ L    N+  PLFKWH KVLEK G G ++R L  R+T+
Sbjct:   21 GDALKKSLENPPLAAKNKETKKKSADVVAKVLVNTKEADIPKIVDSLDADELDILMKYIYRCLETGDNDSKPLFKWHEKVLEKSGMGSIVRVLSERKTI 119
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BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: A0A7S0Q3G7_9EUKA (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q3G7_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 7.300e-18
Identity = 46/124 (37.10%), Postives = 71/124 (57.26%), Query Frame = 1 
Query: 1345 DPAAMGEVQQRETAVRGMLHRDPGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNG---PLFKWHAKVLEKGGPGCVMRTLVSRQTV 1707
            D A +  ++ R++++  +L  DP  AL  SL DPP   K +AVK  S + V   L  +++  +E  +A LSLD+ DVL+KY+Y GLG  + +    PL KWH  VL++ G   ++R +   Q V
Sbjct:   20 DNAMLAAIKARDSSIAPLLRTDPVRALHLSLADPPYQTKTQAVKDASCDVVCKALLAIKDADVEPAVAALSLDQCDVLMKYIYSGLGQTKKDKQYQPLLKWHGLVLKRAGQASIVRVISEVQRV 143
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BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: D3BAU2_POLPP (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BAU2_POLPP)

HSP 1 Score: 90.9 bits (224), Expect = 1.020e-17
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1 
Query: 1324 KAPGAVSDPAAMGEVQQRETAVRGMLHRDPG-GALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPR-----NNGPLFKWHAKVLEKGGPGCVMRTLVSRQTV 1707
            K  G  SD     ++  RE  V   L++     AL   L DPP++ K +A+K ++   V+ VL+ ++E +I+ CL  L  D++D+L+KY+Y+GL         N    FKW+   L+K G GCV+R +  R+TV
Sbjct:   12 KTTGGKSDAEYKSDIAAREREVTKFLNQSKAVDALPVVLADPPIYTKSQAIKDQNAAIVINVLSNIKEKEIDGCLESLDADQLDILMKYIYRGLAAAATSDNTNAALFFKWYEATLKKAGMGCVVRAISERKTV 145
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BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Match: F1A489_DICPU (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A489_DICPU)

HSP 1 Score: 89.4 bits (220), Expect = 2.920e-17
Identity = 45/123 (36.59%), Postives = 72/123 (58.54%), Query Frame = 1 
Query: 1342 SDPAAMGEVQQRETAVRGMLHRD-PGGALRKSLEDPPVFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKVLEKGGPGCVMRTLVSRQTV 1707
            SD     ++  RE  V   L+   P  AL  +L DPP++ K  A+K ++   VL +L   +E  +E  +  L+ +++DVL+KYVY+GL +  N+   FKWH  VL+KGG G ++R +  ++TV
Sbjct:   16 SDAEYKSDISNREKEVTKALNMGKPQDALAVALADPPIYTKTAAIKDQNATIVLNLLGSFKEKDVETSVESLNDEQLDVLMKYVYRGLAVGENSAIFFKWHECVLKKGGMGTIIRVISEKKTV 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1879.5920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JER8_9PHAE3.200e-14372.93Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
D8LCU1_ECTSI1.550e-7790.88Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A7S0JJE6_9EUKA5.000e-2040.00Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
UPI000644EC788.780e-2035.38hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A7RWB9_NEMVE7.230e-1942.45Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A8J4UWY0_9MYCE1.280e-1838.10Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
D2VCL2_NAEGR2.650e-1845.45Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A7S0Q3G7_9EUKA7.300e-1837.10Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
D3BAU2_POLPP1.020e-1735.07Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
F1A489_DICPU2.920e-1736.59Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1879contigEcto-sp13_S_contig1879:5114..10478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score265.4
Seed ortholog evalue6.2e-68
Seed eggNOG ortholog2880.D8LCU1
Preferred nameARPC5
Model size2508
KEGG koko:K05754,ko:K14016
KEGG Pathwayko04141,ko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map04141,map04144,map04666,map04810,map05100,map05130,map05131,map05132
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0000001,GO:0000147,GO:0000902,GO:0000904,GO:0001667,GO:0001775,GO:0002009,GO:0002252,GO:0002253,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002443,GO:0002444,GO:0002446,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003779,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005826,GO:0005829,GO:0005856,GO:0005885,GO:0005937,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006909,GO:0006928,GO:0006955,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0009653,GO:0009790,GO:0009825,GO:0009888,GO:0009987,GO:0010026,GO:0010090,GO:0010631,GO:0010638,GO:0012505,GO:0012506,GO:0014812,GO:0014909,GO:0015629,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016331,GO:0016477,GO:0019867,GO:0019898,GO:0021761,GO:0021769,GO:0022607,GO:0023052,GO:0030011,GO:0030027,GO:0030029,GO:0030030,GO:0030036,GO:0030041,GO:0030139,GO:0030141,GO:0030154,GO:0030175,GO:0030424,GO:0030426,GO:0030427,GO:0030479,GO:0030659,GO:0030666,GO:0030670,GO:0030832,GO:0030833,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030900,GO:0031090,GO:0031097,GO:0031143,GO:0031252,GO:0031312,GO:0031315,GO:0031334,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031982,GO:0031983,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032535,GO:0032940,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0033267,GO:0034314,GO:0034622,GO:0034774,GO:0036230,GO:0038093,GO:0038094,GO:0038096,GO:0040007,GO:0040011,GO:0042119,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043299,GO:0043312,GO:0043332,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044455,GO:0044463,GO:0044464,GO:0044877,GO:0045010,GO:0045055,GO:0045321,GO:0045335,GO:0046903,GO:0048013,GO:0048308,GO:0048311,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051015,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051258,GO:0051286,GO:0051493,GO:0051495,GO:0051639,GO:0051640,GO:0051641,GO:0051646,GO:0051674,GO:0051716,GO:0060205,GO:0060322,GO:0060429,GO:0061024,GO:0061645,GO:0061842,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070938,GO:0071840,GO:0071944,GO:0090066,GO:0090130,GO:0090132,GO:0090558,GO:0090626,GO:0097159,GO:0097435,GO:0097458,GO:0097581,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:0098858,GO:0099503,GO:0099568,GO:0099738,GO:0101002,GO:0110053,GO:0120025,GO:0120036,GO:0120038,GO:0150034,GO:1901363,GO:1902903,GO:1902905,GO:1904813
Exons7
EggNOG free text desc.Arp2/3 complex-mediated actin nucleation
EggNOG OGsKOG3380@1,KOG3380@2759
Ec32 ortholog descriptionactin related protein 2/3 complex, subunit 5
Ec32 orthologEc-07_006900.1
Cds size1710
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1879.5920.1prot_Ecto-sp13_S_contig1879.5920.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1879 5114..9680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462961.1756027-CDS-Ecto-sp13_S_contig1879:5113..51751681462961.1756027-CDS-Ecto-sp13_S_contig1879:5113..5175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 5114..5175 +
1681462961.1900272-CDS-Ecto-sp13_S_contig1879:5953..64701681462961.1900272-CDS-Ecto-sp13_S_contig1879:5953..6470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 5954..6470 +
1681462961.1985354-CDS-Ecto-sp13_S_contig1879:6572..66321681462961.1985354-CDS-Ecto-sp13_S_contig1879:6572..6632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 6573..6632 +
1681462961.2072308-CDS-Ecto-sp13_S_contig1879:6899..76401681462961.2072308-CDS-Ecto-sp13_S_contig1879:6899..7640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 6900..7640 +
1681462961.2814393-CDS-Ecto-sp13_S_contig1879:7869..79651681462961.2814393-CDS-Ecto-sp13_S_contig1879:7869..7965Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 7870..7965 +
1681462961.34254-CDS-Ecto-sp13_S_contig1879:8488..86591681462961.34254-CDS-Ecto-sp13_S_contig1879:8488..8659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 8489..8659 +
1681462961.355223-CDS-Ecto-sp13_S_contig1879:9617..96801681462961.355223-CDS-Ecto-sp13_S_contig1879:9617..9680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 9618..9680 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462961.36835-UTR-Ecto-sp13_S_contig1879:9680..104781681462961.36835-UTR-Ecto-sp13_S_contig1879:9680..10478Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1879 9681..10478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1879.5920.1

>prot_Ecto-sp13_S_contig1879.5920.1 ID=prot_Ecto-sp13_S_contig1879.5920.1|Name=mRNA_Ecto-sp13_S_contig1879.5920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=570bp
HCHSQHVRTVRGANKRGRQKWSQQPQPAEGPNARQQHHVGAAATTASPAW
ATAAPRVSTPATPRFSTTAATRPLCRPPADPRLRSSVHPRRGAAAGAVLR
PPADGGVPAAAAGSKPGPPCRAGSLAAARADERAPAGPRRRAADAGALGA
GGAGAVADTELLAAAPTGAVCLPAPCPAGGAKLPTTGPPGGPELPAPCPA
GCADVPAAAAAGTPAVSQGGYQPPPPVPSASSYQYNPPAPAAPTGGYQPP
PPPTPAAGSSPPPPPASSLYGYQPPAPAATSPPSSGYQPPAPAIPSYTPA
AHIPPAAPTVALRKVTPVAQPPPPPSSQPAAEPYTGLRSTFSSSPPVPAP
APYSPPAPAAVPPPPAATYQPPAAAQYGGGGGGYNPPVAAPAPAALAPVQ
QYRSASPPSSQQGYSPPPPAATSGGGYQPPVVGGGGAGAPSKAPGAVSDP
AAMGEVQQRETAVRGMLHRDPGGALRKSLEDPPVFCKDEAVKAKSTECVL
MVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKV
LEKGGPGCVMRTLVSRQTV*
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mRNA from alignment at Ecto-sp13_S_contig1879:5114..10478+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1879.5920.1 ID=mRNA_Ecto-sp13_S_contig1879.5920.1|Name=mRNA_Ecto-sp13_S_contig1879.5920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5365bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1879:5114..10478+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACTGCCACAGCCAGCACGTGCGTACTGTGAGAGGCGCCAACAAGAGAGG
AAGACAGAAGTGGTGAGAGGGAGACATTGTACTATTCGTCCGCTTTCCTT
GGTGCTGTTCTGGCTAAAATGAAAATTTGATTGATGCTGCGCGTCGATCA
TATGGCCCAACACATCCTACCTCCCCACAAAGGGTTCGTCCGAACAAAAT
GGTGTAGAAGAGAGAGGGTCTCGCACGCACGGGCAGGAGGGACAGCAGGC
ACATATGTACGGATGGTATCAGCTCCACGACTCTGCTGTGACGTCGTGTC
TTGGAGCGAGGAACTCTTTCTGGTCTGCAAGACCAAAAGCAGTAGCCGAA
ATAGGAGTGTACCCGCGATGTCCCTTCAGTGTTTTTTTTGTTCAGCGGCG
CCTGGTTGTATTCCCCGCGGCACGATACGAAGGTTGCAGAGGAGACATCG
CTGTGTACTGCTCGGGGAATCGTAGACACAAAAGTAGCTTCCGCTGACGC
TATGAATTGATTGCTGATTTTCCCAGACTCTTATCTTTGGAGATTAATTG
GTTGTGCCATACGTATAGAACGAAAAGGGCCTAGACCTCACCGGGCACCG
GGCACCCCCAGGCCAAGGGCAGCTGTGTGCATGTAAATATGTGTTGTACA
TCTGAGATGGCATCATAGACACCAGCTTGTGTAGCCCCGTCGTGTTTCTT
CGTGTTTTAGTCTTTTGGCATGCTGCAACTCCTTCCACAAATGTACCGTA
GTAGGAAGCACACAGCTTCTTCGTGGAACCCTTTCCGATGCTCCTCCTTC
CAAGCCGGTTCACCCCCCTACCCTTGCCGGCATCCCATAGGTCGCAGCAG
CCGCAGCCCGCCGAGGGACCGAACGCGAGGCAACAACATCATGTCGGCGC
CGCCGCCACCACCGCCTCCCCGGCGTGGGCCACCGCCGCTCCCCGGGTCA
GCACCCCCGCCACTCCCAGGTTCAGCACCACCGCCGCCACCCGTCCCCTC
TGCCGGCCCCCCGCCGATCCCCGGCTCCGCTCCTCCGTCCATCCCCGCCG
CGGCGCCGCCGCCGGTGCCGTCCTACGGCCCCCCGCGGACGGGGGTGTCC
CCGCCGCCGCCGCCGGTTCCAAGCCGGGGCCCCCCTGCCGTGCCGGGAGC
CTCGCCGCCGCCCGTGCCGATGAGCGCGCCCCCGCCGGTCCCCGGCGGCG
CGCGGCCGATGCTGGCGCACTCGGCGCCGGCGGCGCGGGGGCCGTCGCTG
ATACCGAACTCCTCGCCGCCGCCCCCACCGGTGCCGTCTGCCTACCAGCC
CCCTGCCCCGCCGGCGGTGCCAAGCTACCAACCACCGGCCCCCCCGGCGG
TCCCGAGGTCCCAGCCGCCGGCCCCTCCCCTGGCGGTGCCGAGCTACCAG
CCCCCTGCCCCGCCGGCTGTGCCGAGGTCCCAGCCGCCGCCGCCGCCGGT
AGTGCCGAGCTACCAGCCCCCTGCCCTGCCGGCTGTGCCGATGTCCCAGC
CGCTGCCGCCGCCGGTACGGTTTACAGATGTAGACGTCGTGGTATGTAGC
GGTTAGCACTTTGGGAGACGAAATTGGAGACGATTTATGTGGGAGCATGT
TGTCACTATCGACAGGTTGTGTTGTGTAAGTATGGATGAACATATAGCTG
TAGGTTCAGTCACGCCAAACGCATGCCCCAACTGCTTTGTACATAAATGG
TGGGCAACGCTGCCGTCACCATGGCCGTAAGTTACAATTTTTAGCTTGTC
TCCGTTCGCCCGCCTTGTCGCCCGCTTCCACAGCAGCCCGCCGTAAGCCA
GGGAGGGTACCAGCCGCCGCCCCCGGTCCCCTCCGCCTCGAGCTACCAGT
ACAATCCCCCAGCCCCAGCAGCTCCGACGGGAGGTTACCAGCCCCCGCCT
CCGCCGACACCGGCAGCAGGCAGCTCGCCTCCCCCGCCCCCGGCCTCATC
ATTGTACGGGTATCAACCCCCGGCACCGGCGGCGACGTCTCCCCCATCGT
CGGGATACCAGCCCCCCGCCCCGGCGATCCCGTCCTACACGCCGGCCGCG
CACATCCCGCCGGCCGCGCCTACGGTGGCGCTCCGGAAAGTAACTCCCGT
GGCCCAGCCCCCGCCCCCGCCGTCATCACAGCCTGCCGCGGAGCCCTACA
CGGGGCTGCGGTCTACCTTCAGCTCGTCGCCGCCGGTGCCCGCGCCGGCC
CCTTACTCGCCCCCAGCACCGGCTGCCGTCCCCCCGCCGCCGGCCGCGAC
GTACCAGCCACCCGCCGCGGCGCAGTACGGCGGGGGAGGGGGGGGGTACA
ACCCTCCCGTGGCGGCACCGGCACCGGCTGCGTTGGCGCCGGTGCAGCAG
TACAGGAGCGCCTCACCGCCGTCTTCGCAGCAGGGGTACTCGCCGCCCCC
GCCTGCTGCCACCTCGGGGGGGGGTTACCAGCCCCCTGTGGTCGGAGGAG
GGGGCGCGGGAGCACCGAGCAAGGCGCCGGGCGCGGTGTCTGACCCTGCG
GCTATGGGCGAGGTGCAGCAACGAGAGGTGAGAGCACGTGCTTGCTTTTT
GCAAGAACGCTGCTGTTGTGTGTCACGAGGAGGTCAGTTCAGAAGGCGGG
CGTTGTTTGTTTTGGGAACGGACGAAGGGACATCTCGGATGTGTTGTAGA
AGACGGACCAGACGCTCAGAAGACCACGTGCTATGTACGTAGCAGCACCG
CCTCCTCCTGTTTTGCCGTAATTTTAACCCAGCTCTCTTGTCGGTTCGAA
TGACAGACGGCTGTGCGGGGGATGCTACACAGAGACCCCGGCGGGGCGCT
TCGGAAATCGCTCGAGGACCCGCCTGTCTTCTGCAAGGACGAAGCCGTCA
AGGTTCGCGCACATGCACGAGTTTTTCTGTTTGGTTTCGTCTCGTGTCCC
TGGGGGAGTTCTTGGTTGGTGTTAATGTTACACACGCGTAACCTGTGCGT
TCTTGCCTCCCCTCTACAGGCAGTTAATCTGGAGGAAATTCAAACTATCT
AGACGTGCATCGAGATGGACCGCATCATGTATCCCTTTGGCGGTGCATGC
GTGAGACACCCCCCTTCTTTTCCTCGGTTTACGTGTCAAATGCCATGTCC
TTTATTTTCTTGGGATCTGGTTCGAGTACCCGCGGGTTCAATCGTCTCGG
AGCCAGCACGGACGGATCCGAAGCGGGTTAGAAGACCAGTGACCCAACTC
CCTATCCCATAACCTTCCCGTATTCGGGTAAAGATCAGCAGCCAACTCCC
CATCTCGGTTGCTCATACCCTCCCCGTATCCAAGTGTAGACCAGTTACCC
CAACTTCCCATCCCACACGTACCCGGGTATAGACCAGTGACCCAACTCCC
CATCTGATGTCCTCCCCGCGAACAGGCTAAGAGCACGGAGTGCGTGTTGA
TGGTGCTGACGGGGGTCCGCGAGGACCAGATCGAGAACTGCCTGGCCGGT
CTGTCCTTGGACGAGATGGACGTCCTCGTCAAGTACGTCTACAAGGGCCT
GGGGATGCCTCGCAACAACGGGCCACTGTTCAAGTGGCACGCGAAGGTGC
GTTGGGGGTTGGGGAGTGTTCCATGGGGAGCAAGTGTTTCACGTGGCTGG
GGGGGGGGGGGGGATACTCATAGTCGTGCATGCATTAGTCGTTGGACAAT
TGACCTCGCATCTCTTCAAAGTCGGGACGGAGCACGCCGGGTTCTTACCG
GACCAGGCTCTAATCACCAAGCGCGAAGTGCCGTGACGCATACGGCGAGT
CGCATGAAGGGTGCGCTGCATCCTGTGAAGGGTGTTCGGTATTTGCGCTT
ACTTCCCTGCGTACGTATGACAGCTGCGTATGACTTCATTTGTTTTCTGG
TACTTTCTCTTCCAGAGACAGTTCTAAGCACGGTGTAACTGCCTCGCTTG
ACTAATTTAACACAACGTGGTGCGATCATCCCCCTTGCGTGGAGTGAGGG
TTCTCGACCCCGCACAACGTAATCTACTCGACCACCATTGTGGTTACCGC
AAAAAAAAAATACAGAGGCATTACAAACGGTTACCTGGTTGCCGACATCA
CGAAGTGACGTTGCCAAGCGACGAAATCCCAATCCCGACGGCAAACACCG
AGGGGGCGGCTTGTTCAACAACGTCGTTGCCAAGCGACGAGAACCCAACC
CCGATGGCAAACACCCGGGGGGGGGGGCTAGTTTTACAAAGTCGTTGCCA
AGCGACAACCCACCCCCGATGGCAAACGCCGGGGGGGGCATCGGGGGGGG
GTGTGTGTTCGTTGAAGCCCCTTTCTTTCCCTCTTACTATCATCGTAGTA
TGACGTTTTTTGGATGCTTTCAGTGTGTTTGCGGTATCGCAACGTTCTCC
CGATGTTTGCGAATTGTGCGTTGTTACTGATTTTTTTGTGTCGTTCGGAA
GAGCTCCACTGCGATTCACCATTGCTGTTGTGCTCACCAGTTCTCCCCCC
ACTGGGTTGGTTTTGTCCACTTCTTTCGTTCCGTGTTGTGTAACTCGTGC
ACAGGTGCTAGAGAAGGGGGGACCCGGATGCGTGATGCGTACGCTCGTTT
CACGGCAAACGGTGTGATATGTCCACACGTCAGGGTCACATCGTGGAGTG
CTCGGGCTTGTAGTGACCTCGTTGGATGCCCCTTGACGGCCTCAGCGAGC
AAACCTAGGAATATTGCAAAGGGGAAGGGGAAAAGGGCATTTGAGAAGAG
TAAGAGTCGAGAGGTTGGTGGTGGCCGTTGCATGCCTGTTGTACTTGGCG
ATGGCTACTTGGTTGTGGGTGTGTTGTGGCTGTTGCTGCCTACACGCTGC
GCACCGTTTAAAGGGGCGCGGGAAGAGGTTAACGAGGTCTTTCGCACAGC
AGTTCCGCTTTTGGAAACATGTGTCATAGCGTTCAGCGTTGTCAACGAGC
TTTTCTCTAAAAAAAGACAAGTAGGCATATGTGGACGATTTAAAAGCGAT
CACTATGTAGACGATGTGCAAGTCATAAGAGATTACCAAGCTGTTCAAGA
CGATCTTCTTGCGACACTGAACTCCACCAAGCCATGGCGTACAGCTAACG
CTGCTTGCCCTCGCTTGTGCCTCTCAGCTGGCATGCTCCGGTTTTTGGAT
GTGATGGACCTTCCCACCCGCTCAAAACACGACGCCCGCGTCTCCACTGA
TGACGTTCACAAAGTAGGTAACAGGAAATATTCTGTAGTGGTTTTTGCAC
CGCTGGGTGTTCACCACTGCAGGCTTAGAAGGTTTCTACTGAGGTGGTCG
CTGTGATGTGAAGAGACGTTGACGCCAGCAACAGGGATTTTTGTCATCAT
GAAGTAGTAGAGTAAATGCCTTTGCGACAGGCACGTGAATCGACTCCATT
TTGTCGCCTTTGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1879:5114..10478+

>mRNA_Ecto-sp13_S_contig1879.5920.1 ID=mRNA_Ecto-sp13_S_contig1879.5920.1|Name=mRNA_Ecto-sp13_S_contig1879.5920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1710bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1879:5114..10478+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACTGCCACAGCCAGCACGTGCGTACTGTGAGAGGCGCCAACAAGAGAGG
AAGACAGAAGTGGTCGCAGCAGCCGCAGCCCGCCGAGGGACCGAACGCGA
GGCAACAACATCATGTCGGCGCCGCCGCCACCACCGCCTCCCCGGCGTGG
GCCACCGCCGCTCCCCGGGTCAGCACCCCCGCCACTCCCAGGTTCAGCAC
CACCGCCGCCACCCGTCCCCTCTGCCGGCCCCCCGCCGATCCCCGGCTCC
GCTCCTCCGTCCATCCCCGCCGCGGCGCCGCCGCCGGTGCCGTCCTACGG
CCCCCCGCGGACGGGGGTGTCCCCGCCGCCGCCGCCGGTTCCAAGCCGGG
GCCCCCCTGCCGTGCCGGGAGCCTCGCCGCCGCCCGTGCCGATGAGCGCG
CCCCCGCCGGTCCCCGGCGGCGCGCGGCCGATGCTGGCGCACTCGGCGCC
GGCGGCGCGGGGGCCGTCGCTGATACCGAACTCCTCGCCGCCGCCCCCAC
CGGTGCCGTCTGCCTACCAGCCCCCTGCCCCGCCGGCGGTGCCAAGCTAC
CAACCACCGGCCCCCCCGGCGGTCCCGAGCTACCAGCCCCCTGCCCTGCC
GGCTGTGCCGATGTCCCAGCCGCTGCCGCCGCCGGTACGCCCGCCGTAAG
CCAGGGAGGGTACCAGCCGCCGCCCCCGGTCCCCTCCGCCTCGAGCTACC
AGTACAATCCCCCAGCCCCAGCAGCTCCGACGGGAGGTTACCAGCCCCCG
CCTCCGCCGACACCGGCAGCAGGCAGCTCGCCTCCCCCGCCCCCGGCCTC
ATCATTGTACGGGTATCAACCCCCGGCACCGGCGGCGACGTCTCCCCCAT
CGTCGGGATACCAGCCCCCCGCCCCGGCGATCCCGTCCTACACGCCGGCC
GCGCACATCCCGCCGGCCGCGCCTACGGTGGCGCTCCGGAAAGTAACTCC
CGTGGCCCAGCCCCCGCCCCCGCCGTCATCACAGCCTGCCGCGGAGCCCT
ACACGGGGCTGCGGTCTACCTTCAGCTCGTCGCCGCCGGTGCCCGCGCCG
GCCCCTTACTCGCCCCCAGCACCGGCTGCCGTCCCCCCGCCGCCGGCCGC
GACGTACCAGCCACCCGCCGCGGCGCAGTACGGCGGGGGAGGGGGGGGGT
ACAACCCTCCCGTGGCGGCACCGGCACCGGCTGCGTTGGCGCCGGTGCAG
CAGTACAGGAGCGCCTCACCGCCGTCTTCGCAGCAGGGGTACTCGCCGCC
CCCGCCTGCTGCCACCTCGGGGGGGGGTTACCAGCCCCCTGTGGTCGGAG
GAGGGGGCGCGGGAGCACCGAGCAAGGCGCCGGGCGCGGTGTCTGACCCT
GCGGCTATGGGCGAGGTGCAGCAACGAGAGACGGCTGTGCGGGGGATGCT
ACACAGAGACCCCGGCGGGGCGCTTCGGAAATCGCTCGAGGACCCGCCTG
TCTTCTGCAAGGACGAAGCCGTCAAGGCTAAGAGCACGGAGTGCGTGTTG
ATGGTGCTGACGGGGGTCCGCGAGGACCAGATCGAGAACTGCCTGGCCGG
TCTGTCCTTGGACGAGATGGACGTCCTCGTCAAGTACGTCTACAAGGGCC
TGGGGATGCCTCGCAACAACGGGCCACTGTTCAAGTGGCACGCGAAGGTG
CTAGAGAAGGGGGGACCCGGATGCGTGATGCGTACGCTCGTTTCACGGCA
AACGGTGTGA
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