prot_Ecto-sp13_S_contig175.5256.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig175.5256.1
Unique Nameprot_Ecto-sp13_S_contig175.5256.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length216
Homology
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 4.220e-29
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = 0
Query:  125 LTTTPTTTAGGILAPTTDNIDQINDFILRKMPGNVHERLRSEK--------------KCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGERGVFRGIS 215
            LT T TTT  GILAPT+D+IDQI+DFILRKMPGNVHE+L S+K              + LN +N PGTP HKLNLK GA IFFIRNI+  CGL+NG+RGV RGIS
Sbjct:  548 LTATSTTTDRGILAPTSDDIDQIHDFILRKMPGNVHEQLSSDKIVKDDENMPDVASVEYLNIINAPGTPPHKLNLKGGALIFFIRNIDFDCGLVNGKRGVIRGIS 652          
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI000511766F (ATP-dependent DNA helicase PIF1-like n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI000511766F)

HSP 1 Score: 90.5 bits (223), Expect = 7.410e-18
Identity = 62/199 (31.16%), Postives = 102/199 (51.26%), Query Frame = 0
Query:   32 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKIESVL-----WPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPG---------NVHERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGER 208
            ++F GD RQV PV+P GT SE+++ A  +++  W H    RL   MR  ND  ++  +L VG G+ E+++      P +  +     +S   +  ++      H+          I+ P  ++ D+IN  I+ K PG         +V + +R+  +++ LNS+++ G P H+L LK GA I  +RNIN   GL NG R
Sbjct:   29 IIFGGDFRQVLPVVPKGTRSELMQ-ASMINASFWEHVKIIRLRHNMRSINDQDFSEFLLHVGNGEQETMIDDMMQLPSSMVIPWNGEESIVQLVNEVFPDLECHVCDARYLVERAIITPKNEDADKINKMIIDKFPGIEHILYSFDSVEDDVRNLYQQEFLNSISLGGMPPHQLTLKKGAPIMLLRNINPKMGLCNGTR 226          
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI0010A46152 (uncharacterized protein LOC114722452 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A46152)

HSP 1 Score: 91.3 bits (225), Expect = 7.680e-18
Identity = 68/217 (31.34%), Postives = 105/217 (48.39%), Query Frame = 0
Query:   32 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMR---------EKNDIPYATTVLAVGEGKI--------------ESVLWPMASPLFHRNTQSKTTMARKLHLTTTPTTTAGGILAPTTDNIDQINDFILRKMPGNVHERLRSEK-----------------KCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGER 208
            ++  GD RQ+ PV+P G  ++I+  A   SS LW     F+LTK MR         +K    ++  +L VG+G I              + ++     P+   +  S T +A + ++T     T   ILAPTTD +DQIND++L  +PG+  + L S+                  + LN++N  G P HKL+LK+G  +  +RNI+   GL NG R
Sbjct:  210 VIMGGDFRQILPVIPKGFRADIINAAIN-SSALWLSCKLFKLTKNMRLQFAAEAIDQKKVSEFSRWLLDVGDGTIGLPHEGTTDIEIPADFLITDSLDPI--NSIVSSTYLALQQNITHPNYLTERAILAPTTDVVDQINDYMLSLLPGDPVQYLSSDSISSTDQDSSSFEDLYSPEFLNTINCSGMPPHKLSLKVGIPVMLLRNIDQSAGLCNGTR 423          
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI000D08AAD0 (uncharacterized protein LOC112194807 isoform X1 n=4 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D08AAD0)

HSP 1 Score: 91.3 bits (225), Expect = 1.280e-17
Identity = 65/204 (31.86%), Postives = 102/204 (50.00%), Query Frame = 0
Query:   32 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKI-----ESVLWPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPG---------NVHERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGERGVFRG 213
            ++F GD RQV PV+P GT+SE+++ A  + S  W+H    RL + MR  ND  +A  +L VG+G       E +  P    +   + QS   +  ++      H+          ++ P  D++D +N+ I+   PG         +V +  R+  + + LNS+   G P HKL LK+GA I  +RNI+   GL NG R + RG
Sbjct: 1228 MIFGGDFRQVLPVIPKGTKSELIQ-ASIVKSTFWTHIKILRLRQNMRSINDHQFAEFLLRVGDGSEQVINDEMIRLPECMVVPWESDQSINLIIDEVFPNLGDHVNDARYMVDRALITPINDDVDVLNEKIIYMFPGEEITLYSFDSVEDDSRNLYQPEFLNSITAGGLPPHKLTLKVGAPIMLLRNIDPKLGLCNGTRLLCRG 1430          
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI0005109A3D (uncharacterized protein LOC103945713 n=5 Tax=Maleae TaxID=721813 RepID=UPI0005109A3D)

HSP 1 Score: 90.1 bits (222), Expect = 3.000e-17
Identity = 62/199 (31.16%), Postives = 101/199 (50.75%), Query Frame = 0
Query:   32 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKIESVL-----WPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPGNVH---------ERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGER 208
            ++F GD RQV PV+P GT SE+++ A  +++  W H    RL   MR  ND  ++  +L VG G+ E+++      P +  +     +S   +  ++      H+          I+ P  ++ D+IN  I+ K PGN H         + +R+  +++ LNS++  G P H+L LK GA I  +RNI+   GL NG R
Sbjct:  655 IIFGGDFRQVLPVVPKGTRSELMQ-ASMINASFWEHVKIIRLRHNMRSINDQDFSEFLLHVGNGEQETMIDDMMQLPSSMVIPWNGEESIVQLVNEVFPDLECHVCDARYLVERAIITPKNEDADKINKMIIDKFPGNEHILYSFDSVEDDVRNLYQQEFLNSISPGGMPPHQLTLKKGAPIMLLRNIDPKMGLCNGTR 852          
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: A0A2P6SH82_ROSCH (ATP-dependent DNA helicase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SH82_ROSCH)

HSP 1 Score: 86.3 bits (212), Expect = 3.570e-17
Identity = 61/199 (30.65%), Postives = 99/199 (49.75%), Query Frame = 0
Query:   32 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKI-----ESVLWPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPG---------NVHERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGER 208
            ++F GD RQV PV+P GT+SE+++ A  + +  W+     RL + MR  ND  +A  +L VG+G       E +  P    +   + QS   +  ++      H+          ++ P  D++D +N+ I+   PG         +V + +R+  + + LNS+   G P HKL LK+GA I  +RNI+   GL NG R
Sbjct:   12 MIFGGDFRQVLPVIPKGTKSELIQ-ASIVKATFWAQTKILRLRQNMRSINDHQFAEFLLRVGDGSEQVIDDEMMRLPERMVVPWESDQSINQIIDEVFPNLGDHVNDARYMVDRALITPINDDVDVLNEKIINMFPGEEITLYSFDSVEDDMRNLYQPEFLNSITAGGLPPHKLTLKVGAPIMLLRNIDPKLGLCNGTR 209          
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI000D08B508 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D08B508)

HSP 1 Score: 87.8 bits (216), Expect = 6.270e-17
Identity = 63/204 (30.88%), Postives = 102/204 (50.00%), Query Frame = 0
Query:   32 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKI-----ESVLWPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPG---------NVHERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGERGVFRG 213
            ++F GD RQV PV+P GT+SE+++ A  + +  W+     RL + MR  ND  +A  +L VG+G       E +  P    +   + QS   +  ++      H+          ++ P  D++D +N+ I+   PG         +V + +R+  + + LN + V G P HKL LK+GA I  +RNI+   GL NG R + RG
Sbjct:   12 MIFGGDFRQVLPVIPKGTKSELIQ-ASIVKATFWAQTMILRLRQNMRSINDHQFAEFLLRVGDGSEQVIDGEMIRLPECMVVPWESDQSINQIIDEVFPNLGDHVNDARYMVDRALITPINDDVDVLNEKIINMFPGEEITLYSFDSVEDDMRNLYQPEFLNLITVGGLPPHKLTLKVGAPIMLLRNIDPKLGLCNGIRLLCRG 214          
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI001AD9184D (LOW QUALITY PROTEIN: ATP-dependent DNA helicase PIF1-like n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD9184D)

HSP 1 Score: 89.0 bits (219), Expect = 6.530e-17
Identity = 63/204 (30.88%), Postives = 102/204 (50.00%), Query Frame = 0
Query:   32 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKI-----ESVLWPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPG---------NVHERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGERGVFRG 213
            ++F GD RQV PV+P GT+SE+++ A  + +  W+     RL + MR  ND  +A  +L VG+G       E +  P    +   + QS   +  ++      H+          ++ P  D++D +N+ I+   PG         +V + +R+  + + LNS+   G P HKL LK+GA I  +RNI+   GL NG R + RG
Sbjct:  246 MIFGGDFRQVLPVIPKGTKSELIQ-ASIVKATFWAQTKILRLRQNMRSINDHQFAEFLLCVGDGSEQVIDDEMMRLPERMVVPWESDQSINQIIDEVFPNLGDHVNDARYMVDRALITPINDDVDVLNEKIINMFPGEEITLYSFDSVEDDMRNLYQPEFLNSITAGGLPPHKLTLKVGAPIMLLRNIDPKLGLCNGTRLLCRG 448          
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: A0A6P5S1D2_PRUAV (ATP-dependent DNA helicase n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5S1D2_PRUAV)

HSP 1 Score: 89.0 bits (219), Expect = 7.850e-17
Identity = 60/204 (29.41%), Postives = 102/204 (50.00%), Query Frame = 0
Query:   32 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKI-----------ESVLWPMASPLFHRNTQSKTTMARKLHLTTTPTTTAGGILAPTTDNIDQINDFILRKMPG---------NVHERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGERGVFRG 213
            ++F GD RQV PV+P GT+SE+++ A  + +  WS     +L + MR +ND  ++  +L VG+G+            E ++ P  + L       +     + H+          ++ PT +++D +N+ ++   PG         +V +  R+  + + LNS+ + G P HKL LK GA I  +RNI+   GL NG R + RG
Sbjct:  987 MIFGGDFRQVLPVIPKGTKSELIQ-ASVVKASFWSQVKILKLRQNMRSRNDQQFSQFLLRVGDGEEPVVGDGMIRVPECMVMPWENELSINEFIYQVFPNLEDHINDASYMVERAVITPTNEDVDMLNEKMINMFPGEEETMYSFDSVEDDTRNLYQPEFLNSICIGGLPPHKLTLKRGAPIMLLRNIDPKLGLCNGTRLLCRG 1189          
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI0010A9CB82 (ATP-dependent DNA helicase PIF7-like n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010A9CB82)

HSP 1 Score: 86.7 bits (213), Expect = 1.060e-16
Identity = 60/199 (30.15%), Postives = 100/199 (50.25%), Query Frame = 0
Query:   32 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKIESVL-----WPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPGNVH---------ERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGER 208
            ++F GD RQV PV+P GT SE+++ A  +++  W H    RL   MR  ND  ++  +L VG G+ E+++      P +  +     +S      ++      H+  +       I+ P  ++ D++N  I+ K PG  H         + +R+  +++ LNS++  G P H+L LK GA I  +RNI+   GL NG R
Sbjct:   29 MIFGGDFRQVLPVVPNGTRSELMQ-ASMINASFWGHVKIIRLRHNMRSINDQDFSEFLLHVGNGEQETMIDDMMQLPSSMVIPWNGEESIVQFVNEVFPDLECHVCDSRYLVERAIITPKNEDADKLNKMIIDKFPGTEHILYSFDSVEDDVRNLYQQEFLNSISPGGMPPHQLTLKKGAPIMLLRNIDPKMGLCNGTR 226          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCL4_ECTSI4.220e-2963.81ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
UPI000511766F7.410e-1831.16ATP-dependent DNA helicase PIF1-like n=1 Tax=Pyrus... [more]
UPI0010A461527.680e-1831.34uncharacterized protein LOC114722452 n=1 Tax=Proso... [more]
UPI000D08AAD01.280e-1731.86uncharacterized protein LOC112194807 isoform X1 n=... [more]
UPI0005109A3D3.000e-1731.16uncharacterized protein LOC103945713 n=5 Tax=Malea... [more]
A0A2P6SH82_ROSCH3.570e-1730.65ATP-dependent DNA helicase n=1 Tax=Rosa chinensis ... [more]
UPI000D08B5086.270e-1730.88ATP-dependent DNA helicase PIF1-like n=1 Tax=Rosa ... [more]
UPI001AD9184D6.530e-1730.88LOW QUALITY PROTEIN: ATP-dependent DNA helicase PI... [more]
A0A6P5S1D2_PRUAV7.850e-1729.41ATP-dependent DNA helicase n=1 Tax=Prunus avium Ta... [more]
UPI0010A9CB821.060e-1630.15ATP-dependent DNA helicase PIF7-like n=1 Tax=Malus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010285DNA helicase Pif1-likePFAMPF05970PIF1coord: 32..210
e-value: 6.7E-23
score: 81.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 25..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig175contigEcto-sp13_S_contig175:19799..20518 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig175.5256.1mRNA_Ecto-sp13_S_contig175.5256.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig175 19799..20518 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig175.5256.1 ID=prot_Ecto-sp13_S_contig175.5256.1|Name=mRNA_Ecto-sp13_S_contig175.5256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp
MKLKCLQSLPQKHSTLLLRTYVKLTCPSEEKLLFSGDRRQVAPVLPFGTE
SEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKIESV
LWPMASPLFHRNTQSKTTMARKLHLTTTPTTTAGGILAPTTDNIDQINDF
ILRKMPGNVHERLRSEKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVV
CGLLNGERGVFRGIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
IPR027417P-loop_NTPase