mRNA_Ecto-sp13_S_contig175.5256.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI) HSP 1 Score: 124 bits (311), Expect = 4.220e-29 Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = 1
Query: 373 LTTTPTTTAGGILAPTTDNIDQINDFILRKMPGNVHERLRSEK--------------KCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGERGVFRGIS 645
LT T TTT GILAPT+D+IDQI+DFILRKMPGNVHE+L S+K + LN +N PGTP HKLNLK GA IFFIRNI+ CGL+NG+RGV RGIS
Sbjct: 548 LTATSTTTDRGILAPTSDDIDQIHDFILRKMPGNVHEQLSSDKIVKDDENMPDVASVEYLNIINAPGTPPHKLNLKGGALIFFIRNIDFDCGLVNGKRGVIRGIS 652
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI000511766F (ATP-dependent DNA helicase PIF1-like n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI000511766F) HSP 1 Score: 90.5 bits (223), Expect = 7.410e-18 Identity = 62/199 (31.16%), Postives = 102/199 (51.26%), Query Frame = 1
Query: 94 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKIESVL-----WPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPG---------NVHERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGER 624
++F GD RQV PV+P GT SE+++ A +++ W H RL MR ND ++ +L VG G+ E+++ P + + +S + ++ H+ I+ P ++ D+IN I+ K PG +V + +R+ +++ LNS+++ G P H+L LK GA I +RNIN GL NG R
Sbjct: 29 IIFGGDFRQVLPVVPKGTRSELMQ-ASMINASFWEHVKIIRLRHNMRSINDQDFSEFLLHVGNGEQETMIDDMMQLPSSMVIPWNGEESIVQLVNEVFPDLECHVCDARYLVERAIITPKNEDADKINKMIIDKFPGIEHILYSFDSVEDDVRNLYQQEFLNSISLGGMPPHQLTLKKGAPIMLLRNINPKMGLCNGTR 226
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI0010A46152 (uncharacterized protein LOC114722452 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A46152) HSP 1 Score: 91.3 bits (225), Expect = 7.680e-18 Identity = 68/217 (31.34%), Postives = 105/217 (48.39%), Query Frame = 1
Query: 94 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMR---------EKNDIPYATTVLAVGEGKI--------------ESVLWPMASPLFHRNTQSKTTMARKLHLTTTPTTTAGGILAPTTDNIDQINDFILRKMPGNVHERLRSEK-----------------KCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGER 624
++ GD RQ+ PV+P G ++I+ A SS LW F+LTK MR +K ++ +L VG+G I + ++ P+ + S T +A + ++T T ILAPTTD +DQIND++L +PG+ + L S+ + LN++N G P HKL+LK+G + +RNI+ GL NG R
Sbjct: 210 VIMGGDFRQILPVIPKGFRADIINAAIN-SSALWLSCKLFKLTKNMRLQFAAEAIDQKKVSEFSRWLLDVGDGTIGLPHEGTTDIEIPADFLITDSLDPI--NSIVSSTYLALQQNITHPNYLTERAILAPTTDVVDQINDYMLSLLPGDPVQYLSSDSISSTDQDSSSFEDLYSPEFLNTINCSGMPPHKLSLKVGIPVMLLRNIDQSAGLCNGTR 423
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI000D08AAD0 (uncharacterized protein LOC112194807 isoform X1 n=4 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D08AAD0) HSP 1 Score: 91.3 bits (225), Expect = 1.280e-17 Identity = 65/204 (31.86%), Postives = 102/204 (50.00%), Query Frame = 1
Query: 94 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKI-----ESVLWPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPG---------NVHERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGERGVFRG 639
++F GD RQV PV+P GT+SE+++ A + S W+H RL + MR ND +A +L VG+G E + P + + QS + ++ H+ ++ P D++D +N+ I+ PG +V + R+ + + LNS+ G P HKL LK+GA I +RNI+ GL NG R + RG
Sbjct: 1228 MIFGGDFRQVLPVIPKGTKSELIQ-ASIVKSTFWTHIKILRLRQNMRSINDHQFAEFLLRVGDGSEQVINDEMIRLPECMVVPWESDQSINLIIDEVFPNLGDHVNDARYMVDRALITPINDDVDVLNEKIIYMFPGEEITLYSFDSVEDDSRNLYQPEFLNSITAGGLPPHKLTLKVGAPIMLLRNIDPKLGLCNGTRLLCRG 1430
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI0005109A3D (uncharacterized protein LOC103945713 n=5 Tax=Maleae TaxID=721813 RepID=UPI0005109A3D) HSP 1 Score: 90.1 bits (222), Expect = 3.000e-17 Identity = 62/199 (31.16%), Postives = 101/199 (50.75%), Query Frame = 1
Query: 94 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKIESVL-----WPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPGNVH---------ERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGER 624
++F GD RQV PV+P GT SE+++ A +++ W H RL MR ND ++ +L VG G+ E+++ P + + +S + ++ H+ I+ P ++ D+IN I+ K PGN H + +R+ +++ LNS++ G P H+L LK GA I +RNI+ GL NG R
Sbjct: 655 IIFGGDFRQVLPVVPKGTRSELMQ-ASMINASFWEHVKIIRLRHNMRSINDQDFSEFLLHVGNGEQETMIDDMMQLPSSMVIPWNGEESIVQLVNEVFPDLECHVCDARYLVERAIITPKNEDADKINKMIIDKFPGNEHILYSFDSVEDDVRNLYQQEFLNSISPGGMPPHQLTLKKGAPIMLLRNIDPKMGLCNGTR 852
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: A0A2P6SH82_ROSCH (ATP-dependent DNA helicase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SH82_ROSCH) HSP 1 Score: 86.3 bits (212), Expect = 3.570e-17 Identity = 61/199 (30.65%), Postives = 99/199 (49.75%), Query Frame = 1
Query: 94 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKI-----ESVLWPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPG---------NVHERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGER 624
++F GD RQV PV+P GT+SE+++ A + + W+ RL + MR ND +A +L VG+G E + P + + QS + ++ H+ ++ P D++D +N+ I+ PG +V + +R+ + + LNS+ G P HKL LK+GA I +RNI+ GL NG R
Sbjct: 12 MIFGGDFRQVLPVIPKGTKSELIQ-ASIVKATFWAQTKILRLRQNMRSINDHQFAEFLLRVGDGSEQVIDDEMMRLPERMVVPWESDQSINQIIDEVFPNLGDHVNDARYMVDRALITPINDDVDVLNEKIINMFPGEEITLYSFDSVEDDMRNLYQPEFLNSITAGGLPPHKLTLKVGAPIMLLRNIDPKLGLCNGTR 209
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI000D08B508 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D08B508) HSP 1 Score: 87.8 bits (216), Expect = 6.270e-17 Identity = 63/204 (30.88%), Postives = 102/204 (50.00%), Query Frame = 1
Query: 94 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKI-----ESVLWPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPG---------NVHERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGERGVFRG 639
++F GD RQV PV+P GT+SE+++ A + + W+ RL + MR ND +A +L VG+G E + P + + QS + ++ H+ ++ P D++D +N+ I+ PG +V + +R+ + + LN + V G P HKL LK+GA I +RNI+ GL NG R + RG
Sbjct: 12 MIFGGDFRQVLPVIPKGTKSELIQ-ASIVKATFWAQTMILRLRQNMRSINDHQFAEFLLRVGDGSEQVIDGEMIRLPECMVVPWESDQSINQIIDEVFPNLGDHVNDARYMVDRALITPINDDVDVLNEKIINMFPGEEITLYSFDSVEDDMRNLYQPEFLNLITVGGLPPHKLTLKVGAPIMLLRNIDPKLGLCNGIRLLCRG 214
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI001AD9184D (LOW QUALITY PROTEIN: ATP-dependent DNA helicase PIF1-like n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD9184D) HSP 1 Score: 89.0 bits (219), Expect = 6.530e-17 Identity = 63/204 (30.88%), Postives = 102/204 (50.00%), Query Frame = 1
Query: 94 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKI-----ESVLWPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPG---------NVHERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGERGVFRG 639
++F GD RQV PV+P GT+SE+++ A + + W+ RL + MR ND +A +L VG+G E + P + + QS + ++ H+ ++ P D++D +N+ I+ PG +V + +R+ + + LNS+ G P HKL LK+GA I +RNI+ GL NG R + RG
Sbjct: 246 MIFGGDFRQVLPVIPKGTKSELIQ-ASIVKATFWAQTKILRLRQNMRSINDHQFAEFLLCVGDGSEQVIDDEMMRLPERMVVPWESDQSINQIIDEVFPNLGDHVNDARYMVDRALITPINDDVDVLNEKIINMFPGEEITLYSFDSVEDDMRNLYQPEFLNSITAGGLPPHKLTLKVGAPIMLLRNIDPKLGLCNGTRLLCRG 448
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: A0A6P5S1D2_PRUAV (ATP-dependent DNA helicase n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5S1D2_PRUAV) HSP 1 Score: 89.0 bits (219), Expect = 7.850e-17 Identity = 60/204 (29.41%), Postives = 102/204 (50.00%), Query Frame = 1
Query: 94 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKI-----------ESVLWPMASPLFHRNTQSKTTMARKLHLTTTPTTTAGGILAPTTDNIDQINDFILRKMPG---------NVHERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGERGVFRG 639
++F GD RQV PV+P GT+SE+++ A + + WS +L + MR +ND ++ +L VG+G+ E ++ P + L + + H+ ++ PT +++D +N+ ++ PG +V + R+ + + LNS+ + G P HKL LK GA I +RNI+ GL NG R + RG
Sbjct: 987 MIFGGDFRQVLPVIPKGTKSELIQ-ASVVKASFWSQVKILKLRQNMRSRNDQQFSQFLLRVGDGEEPVVGDGMIRVPECMVMPWENELSINEFIYQVFPNLEDHINDASYMVERAVITPTNEDVDMLNEKMINMFPGEEETMYSFDSVEDDTRNLYQPEFLNSICIGGLPPHKLTLKRGAPIMLLRNIDPKLGLCNGTRLLCRG 1189
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Match: UPI0010A9CB82 (ATP-dependent DNA helicase PIF7-like n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010A9CB82) HSP 1 Score: 86.7 bits (213), Expect = 1.060e-16 Identity = 60/199 (30.15%), Postives = 100/199 (50.25%), Query Frame = 1
Query: 94 LLFSGDRRQVAPVLPFGTESEIVEYAFFLSSGLWSHAHHFRLTKCMREKNDIPYATTVLAVGEGKIESVL-----WPMASPLFHRNTQSKTTMARKL------HLTTTPTTTAGGILAPTTDNIDQINDFILRKMPGNVH---------ERLRS--EKKCLNSMNVPGTPTHKLNLKIGAQIFFIRNINVVCGLLNGER 624
++F GD RQV PV+P GT SE+++ A +++ W H RL MR ND ++ +L VG G+ E+++ P + + +S ++ H+ + I+ P ++ D++N I+ K PG H + +R+ +++ LNS++ G P H+L LK GA I +RNI+ GL NG R
Sbjct: 29 MIFGGDFRQVLPVVPNGTRSELMQ-ASMINASFWGHVKIIRLRHNMRSINDQDFSEFLLHVGNGEQETMIDDMMQLPSSMVIPWNGEESIVQFVNEVFPDLECHVCDSRYLVERAIITPKNEDADKLNKMIIDKFPGTEHILYSFDSVEDDVRNLYQQEFLNSISPGGMPPHQLTLKKGAPIMLLRNIDPKMGLCNGTR 226 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig175.5256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig175.5256.1 >prot_Ecto-sp13_S_contig175.5256.1 ID=prot_Ecto-sp13_S_contig175.5256.1|Name=mRNA_Ecto-sp13_S_contig175.5256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp MKLKCLQSLPQKHSTLLLRTYVKLTCPSEEKLLFSGDRRQVAPVLPFGTEback to top mRNA from alignment at Ecto-sp13_S_contig175:19799..20518- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig175.5256.1 ID=mRNA_Ecto-sp13_S_contig175.5256.1|Name=mRNA_Ecto-sp13_S_contig175.5256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig175:19799..20518- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig175:19799..20518- >mRNA_Ecto-sp13_S_contig175.5256.1 ID=mRNA_Ecto-sp13_S_contig175.5256.1|Name=mRNA_Ecto-sp13_S_contig175.5256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig175:19799..20518- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |