prot_Ecto-sp13_S_contig17490.5255.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17490.5255.1
Unique Nameprot_Ecto-sp13_S_contig17490.5255.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length168
Homology
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 5.720e-111
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDLDGM 166
            QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDLDGM
Sbjct:   19 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDLDGM 184          
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 8.250e-111
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDLDG 165
            QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDLDG
Sbjct:   19 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDLDG 183          
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 239 bits (610), Expect = 5.160e-70
Identity = 107/163 (65.64%), Postives = 125/163 (76.69%), Query Frame = 0
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDL 163
            QFGILSPDE RQMSV QKV VN+  IPEG+T+++ Y++G  +YGG NDPRMGT D   RC+TCDCTYTG G N+VNDCPGHFGH++ ARPV+H GF+D  LKVLR VCFHC+RLR D  D KYK A+  K PK RL+ +HE CR  KKC FGTGDL  GG  L
Sbjct:   21 QFGILSPDETRQMSVTQKVTVNNKVIPEGITRFETYQNGQPLYGGVNDPRMGTFDARARCKTCDCTYTGSGSNKVNDCPGHFGHIKCARPVFHVGFVDTALKVLRCVCFHCARLRVDARDYKYKEAMKEKQPKKRLNRLHEICRTKKKCEFGTGDLEAGGTGL 183          
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A7S3Y9D7_HETAK (DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9D7_HETAK)

HSP 1 Score: 213 bits (543), Expect = 4.150e-68
Identity = 93/153 (60.78%), Postives = 116/153 (75.82%), Query Frame = 0
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGN-QVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 152
            QFG+LSPDE++QMSV Q+V +N  +I  G+ +Y+ Y +G  VYGG NDPRMGT DF  RC+TCDC+Y+G GG   +NDCPGHFGH+ELARPV+H GFLD  LKVLR VCFHCS+L  D+ D K+ RAL IKN + RL+ +HE CR  K C +G
Sbjct:   22 QFGVLSPDEIKQMSVTQRVNINGNEIKSGIYRYETYSNGQPVYGGPNDPRMGTFDFRARCKTCDCSYSGGGGGVSINDCPGHFGHIELARPVFHMGFLDTVLKVLRCVCFHCSKLLVDERDYKFNRALRIKNKRLRLAALHEICRTKKHCEYG 174          
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A2D4CJY5_PYTIN (DNA-directed RNA polymerase subunit (Fragment) n=2 Tax=Oomycota TaxID=4762 RepID=A0A2D4CJY5_PYTIN)

HSP 1 Score: 197 bits (500), Expect = 2.040e-55
Identity = 87/152 (57.24%), Postives = 113/152 (74.34%), Query Frame = 0
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 152
            QFG+ SP+EVR MSV ++ KVND  IP+G+T+ + Y +G  V GG  DPRMGT DF  RC+TCDCTY+G GG +VNDCPGHFGH+ELARP+YH GF+   LK+LRSVCFHCS++  D+ D +++ A+ IKN K RL  ++E C N   C +G
Sbjct:   20 QFGVFSPEEVRAMSVTKQTKVNDRIIPDGITRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGG-KVNDCPGHFGHIELARPMYHLGFIKEVLKILRSVCFHCSKVLSDERDHRFRSAMRIKNGKRRLKAVYEICANKSMCEYG 170          
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: H3GA78_PHYRM (DNA-directed RNA polymerase subunit n=30 Tax=Oomycota TaxID=4762 RepID=H3GA78_PHYRM)

HSP 1 Score: 195 bits (495), Expect = 1.530e-54
Identity = 85/152 (55.92%), Postives = 113/152 (74.34%), Query Frame = 0
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 152
            QFG+ SP+E+R MSV ++ KVND  IP+G+++ + Y +G  V GG  DPRMGT DF  RC+TCDCTY+G GG +VNDCPGHFGH+ELARP+YH GF+   LK+LRSVCFHCS++  D+ D +++ A+ IKN K RL  ++E C N   C +G
Sbjct:   20 QFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGG-KVNDCPGHFGHIELARPMYHMGFIKEVLKILRSVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEICSNKSMCEYG 170          
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A0W8DAF9_PHYNI (DNA-directed RNA polymerase subunit n=3 Tax=Oomycota TaxID=4762 RepID=A0A0W8DAF9_PHYNI)

HSP 1 Score: 195 bits (495), Expect = 1.540e-54
Identity = 85/152 (55.92%), Postives = 113/152 (74.34%), Query Frame = 0
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 152
            QFG+ SP+E+R MSV ++ KVND  IP+G+++ + Y +G  V GG  DPRMGT DF  RC+TCDCTY+G GG +VNDCPGHFGH+ELARP+YH GF+   LK+LRSVCFHCS++  D+ D +++ A+ IKN K RL  ++E C N   C +G
Sbjct:   20 QFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGG-KVNDCPGHFGHIELARPMYHMGFIKEVLKILRSVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEICSNKSMCEYG 170          
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A396ZZC1_9STRA (DNA-directed RNA polymerase subunit n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A396ZZC1_9STRA)

HSP 1 Score: 186 bits (473), Expect = 2.220e-52
Identity = 79/152 (51.97%), Postives = 112/152 (73.68%), Query Frame = 0
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 152
            QFG+ SPDEVRQMSV +++KVND  IP+G+T+ + + +G  V GG  DPRMGT DF  RC+TCDCTY+G G  +VNDCPGHFGH+ELARP++H GF+ +  ++L  +CFHCS++  D+ D +++ A+  KN + RL  ++E C+N   C +G
Sbjct:   20 QFGVFSPDEVRQMSVTKQIKVNDRIIPDGITRPETFINGQPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGA-KVNDCPGHFGHIELARPMFHVGFIKICKQILSCICFHCSKVLVDERDHRFRAAMRQKNGQRRLKMVYEICKNKGMCEYG 170          
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A024UAL5_9STRA (DNA-directed RNA polymerase subunit n=15 Tax=Aphanomyces TaxID=100860 RepID=A0A024UAL5_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.030e-51
Identity = 79/152 (51.97%), Postives = 112/152 (73.68%), Query Frame = 0
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 152
            QFG+ SPDEVRQMSV +++KVND  IP+G+T+ + + +G  V GG  DPRMGT DF  RC+TCDCTY+G G  +VNDCPGHFGH+ELARP++H GF+ +  ++L  +CFHCS++  D+ D +++ A+  KN + RL  ++E C+N   C +G
Sbjct:   20 QFGVFSPDEVRQMSVTKQIKVNDRIIPDGITRPETFINGQPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGA-KVNDCPGHFGHIELARPMFHVGFIKICKQILSCICFHCSKILVDERDHRFRAAMRQKNGQRRLKMVYEICKNKGMCEYG 170          
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A425CUV4_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425CUV4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.370e-51
Identity = 79/152 (51.97%), Postives = 112/152 (73.68%), Query Frame = 0
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 152
            QFG+ SPDEVRQMSV +++KVND  IP+G+T+ + + +G  V GG  DPRMGT DF  RC+TCDCTY+G G  +VNDCPGHFGH+ELARP++H GF+ +  ++L  +CFHCS++  D+ D +++ A+  KN + RL  ++E C+N   C +G
Sbjct:   20 QFGVFSPDEVRQMSVTKQIKVNDRIIPDGITRPETFINGQPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGA-KVNDCPGHFGHIELARPMFHVGFIKICKQILSCICFHCSKVLVDERDHRFRAAMRQKNGQRRLKMVYEICKNKGMCEYG 170          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRY3_ECTSI5.720e-111100.00DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A6H5L9Y2_9PHAE8.250e-111100.00DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A836CHC4_9STRA5.160e-7065.64DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S3Y9D7_HETAK4.150e-6860.78DNA-directed RNA polymerase (Fragment) n=1 Tax=Het... [more]
A0A2D4CJY5_PYTIN2.040e-5557.24DNA-directed RNA polymerase subunit (Fragment) n=2... [more]
H3GA78_PHYRM1.530e-5455.92DNA-directed RNA polymerase subunit n=30 Tax=Oomyc... [more]
A0A0W8DAF9_PHYNI1.540e-5455.92DNA-directed RNA polymerase subunit n=3 Tax=Oomyco... [more]
A0A396ZZC1_9STRA2.220e-5251.97DNA-directed RNA polymerase subunit n=3 Tax=Aphano... [more]
A0A024UAL5_9STRA1.030e-5151.97DNA-directed RNA polymerase subunit n=15 Tax=Aphan... [more]
A0A425CUV4_9STRA1.370e-5151.97DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 1..149
e-value: 3.8E-29
score: 102.0
NoneNo IPR availableGENE3D1.20.120.1280coord: 1..140
e-value: 1.1E-23
score: 85.5
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..154
NoneNo IPR availablePANTHERPTHR19376:SF52DNA-DIRECTED RNA POLYMERASE II SUBUNIT 1coord: 1..154
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17490contigEcto-sp13_S_contig17490:72..3104 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17490.5255.1mRNA_Ecto-sp13_S_contig17490.5255.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17490 72..3105 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17490.5255.1 ID=prot_Ecto-sp13_S_contig17490.5255.1|Name=mRNA_Ecto-sp13_S_contig17490.5255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPR
MGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVT
LKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCV
FGTGDLAGGGMDLDGMGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007080RNA_pol_Rpb1_1