mRNA_Ecto-sp13_S_contig17490.5255.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17490.5255.1
Unique NamemRNA_Ecto-sp13_S_contig17490.5255.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 5.720e-111
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1 
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDLDGM 498
            QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDLDGM
Sbjct:   19 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDLDGM 184
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 8.250e-111
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1 
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDLDG 495
            QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDLDG
Sbjct:   19 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDLDG 183
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 239 bits (610), Expect = 5.160e-70
Identity = 107/163 (65.64%), Postives = 125/163 (76.69%), Query Frame = 1 
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMDL 489
            QFGILSPDE RQMSV QKV VN+  IPEG+T+++ Y++G  +YGG NDPRMGT D   RC+TCDCTYTG G N+VNDCPGHFGH++ ARPV+H GF+D  LKVLR VCFHC+RLR D  D KYK A+  K PK RL+ +HE CR  KKC FGTGDL  GG  L
Sbjct:   21 QFGILSPDETRQMSVTQKVTVNNKVIPEGITRFETYQNGQPLYGGVNDPRMGTFDARARCKTCDCTYTGSGSNKVNDCPGHFGHIKCARPVFHVGFVDTALKVLRCVCFHCARLRVDARDYKYKEAMKEKQPKKRLNRLHEICRTKKKCEFGTGDLEAGGTGL 183
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A7S3Y9D7_HETAK (DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9D7_HETAK)

HSP 1 Score: 213 bits (543), Expect = 4.150e-68
Identity = 93/153 (60.78%), Postives = 116/153 (75.82%), Query Frame = 1 
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGN-QVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 456
            QFG+LSPDE++QMSV Q+V +N  +I  G+ +Y+ Y +G  VYGG NDPRMGT DF  RC+TCDC+Y+G GG   +NDCPGHFGH+ELARPV+H GFLD  LKVLR VCFHCS+L  D+ D K+ RAL IKN + RL+ +HE CR  K C +G
Sbjct:   22 QFGVLSPDEIKQMSVTQRVNINGNEIKSGIYRYETYSNGQPVYGGPNDPRMGTFDFRARCKTCDCSYSGGGGGVSINDCPGHFGHIELARPVFHMGFLDTVLKVLRCVCFHCSKLLVDERDYKFNRALRIKNKRLRLAALHEICRTKKHCEYG 174
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A2D4CJY5_PYTIN (DNA-directed RNA polymerase subunit (Fragment) n=2 Tax=Oomycota TaxID=4762 RepID=A0A2D4CJY5_PYTIN)

HSP 1 Score: 197 bits (500), Expect = 2.040e-55
Identity = 87/152 (57.24%), Postives = 113/152 (74.34%), Query Frame = 1 
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 456
            QFG+ SP+EVR MSV ++ KVND  IP+G+T+ + Y +G  V GG  DPRMGT DF  RC+TCDCTY+G GG +VNDCPGHFGH+ELARP+YH GF+   LK+LRSVCFHCS++  D+ D +++ A+ IKN K RL  ++E C N   C +G
Sbjct:   20 QFGVFSPEEVRAMSVTKQTKVNDRIIPDGITRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGG-KVNDCPGHFGHIELARPMYHLGFIKEVLKILRSVCFHCSKVLSDERDHRFRSAMRIKNGKRRLKAVYEICANKSMCEYG 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: H3GA78_PHYRM (DNA-directed RNA polymerase subunit n=30 Tax=Oomycota TaxID=4762 RepID=H3GA78_PHYRM)

HSP 1 Score: 195 bits (495), Expect = 1.530e-54
Identity = 85/152 (55.92%), Postives = 113/152 (74.34%), Query Frame = 1 
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 456
            QFG+ SP+E+R MSV ++ KVND  IP+G+++ + Y +G  V GG  DPRMGT DF  RC+TCDCTY+G GG +VNDCPGHFGH+ELARP+YH GF+   LK+LRSVCFHCS++  D+ D +++ A+ IKN K RL  ++E C N   C +G
Sbjct:   20 QFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGG-KVNDCPGHFGHIELARPMYHMGFIKEVLKILRSVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEICSNKSMCEYG 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A0W8DAF9_PHYNI (DNA-directed RNA polymerase subunit n=3 Tax=Oomycota TaxID=4762 RepID=A0A0W8DAF9_PHYNI)

HSP 1 Score: 195 bits (495), Expect = 1.540e-54
Identity = 85/152 (55.92%), Postives = 113/152 (74.34%), Query Frame = 1 
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 456
            QFG+ SP+E+R MSV ++ KVND  IP+G+++ + Y +G  V GG  DPRMGT DF  RC+TCDCTY+G GG +VNDCPGHFGH+ELARP+YH GF+   LK+LRSVCFHCS++  D+ D +++ A+ IKN K RL  ++E C N   C +G
Sbjct:   20 QFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGG-KVNDCPGHFGHIELARPMYHMGFIKEVLKILRSVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEICSNKSMCEYG 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A396ZZC1_9STRA (DNA-directed RNA polymerase subunit n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A396ZZC1_9STRA)

HSP 1 Score: 186 bits (473), Expect = 2.220e-52
Identity = 79/152 (51.97%), Postives = 112/152 (73.68%), Query Frame = 1 
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 456
            QFG+ SPDEVRQMSV +++KVND  IP+G+T+ + + +G  V GG  DPRMGT DF  RC+TCDCTY+G G  +VNDCPGHFGH+ELARP++H GF+ +  ++L  +CFHCS++  D+ D +++ A+  KN + RL  ++E C+N   C +G
Sbjct:   20 QFGVFSPDEVRQMSVTKQIKVNDRIIPDGITRPETFINGQPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGA-KVNDCPGHFGHIELARPMFHVGFIKICKQILSCICFHCSKVLVDERDHRFRAAMRQKNGQRRLKMVYEICKNKGMCEYG 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A024UAL5_9STRA (DNA-directed RNA polymerase subunit n=15 Tax=Aphanomyces TaxID=100860 RepID=A0A024UAL5_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.030e-51
Identity = 79/152 (51.97%), Postives = 112/152 (73.68%), Query Frame = 1 
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 456
            QFG+ SPDEVRQMSV +++KVND  IP+G+T+ + + +G  V GG  DPRMGT DF  RC+TCDCTY+G G  +VNDCPGHFGH+ELARP++H GF+ +  ++L  +CFHCS++  D+ D +++ A+  KN + RL  ++E C+N   C +G
Sbjct:   20 QFGVFSPDEVRQMSVTKQIKVNDRIIPDGITRPETFINGQPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGA-KVNDCPGHFGHIELARPMFHVGFIKICKQILSCICFHCSKILVDERDHRFRAAMRQKNGQRRLKMVYEICKNKGMCEYG 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Match: A0A425CUV4_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425CUV4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.370e-51
Identity = 79/152 (51.97%), Postives = 112/152 (73.68%), Query Frame = 1 
Query:    1 QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFG 456
            QFG+ SPDEVRQMSV +++KVND  IP+G+T+ + + +G  V GG  DPRMGT DF  RC+TCDCTY+G G  +VNDCPGHFGH+ELARP++H GF+ +  ++L  +CFHCS++  D+ D +++ A+  KN + RL  ++E C+N   C +G
Sbjct:   20 QFGVFSPDEVRQMSVTKQIKVNDRIIPDGITRPETFINGQPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGA-KVNDCPGHFGHIELARPMFHVGFIKICKQILSCICFHCSKVLVDERDHRFRAAMRQKNGQRRLKMVYEICKNKGMCEYG 170
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17490.5255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRY3_ECTSI5.720e-111100.00DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A6H5L9Y2_9PHAE8.250e-111100.00DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A836CHC4_9STRA5.160e-7065.64DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S3Y9D7_HETAK4.150e-6860.78DNA-directed RNA polymerase (Fragment) n=1 Tax=Het... [more]
A0A2D4CJY5_PYTIN2.040e-5557.24DNA-directed RNA polymerase subunit (Fragment) n=2... [more]
H3GA78_PHYRM1.530e-5455.92DNA-directed RNA polymerase subunit n=30 Tax=Oomyc... [more]
A0A0W8DAF9_PHYNI1.540e-5455.92DNA-directed RNA polymerase subunit n=3 Tax=Oomyco... [more]
A0A396ZZC1_9STRA2.220e-5251.97DNA-directed RNA polymerase subunit n=3 Tax=Aphano... [more]
A0A024UAL5_9STRA1.030e-5151.97DNA-directed RNA polymerase subunit n=15 Tax=Aphan... [more]
A0A425CUV4_9STRA1.370e-5151.97DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17490contigEcto-sp13_S_contig17490:72..3105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score358.6
Seed ortholog evalue1.6e-96
Seed eggNOG ortholog2880.D8LRY3
Preferred nameRPB1
Model size505
KEGG rclassRC02795
KEGG koko:K03006
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05168,ko05169,map00230,map00240,map01100,map03020,map05016,map05168,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0019985,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904
Exons5
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0086@1,KOG0260@2759
EC2.7.7.6
Cds size504
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462911.2128134-CDS-Ecto-sp13_S_contig17490:71..1011681462911.2128134-CDS-Ecto-sp13_S_contig17490:71..101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17490 72..101 +
1681462911.225715-CDS-Ecto-sp13_S_contig17490:1194..12751681462911.225715-CDS-Ecto-sp13_S_contig17490:1194..1275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17490 1195..1275 +
1681462911.2354794-CDS-Ecto-sp13_S_contig17490:1760..19071681462911.2354794-CDS-Ecto-sp13_S_contig17490:1760..1907Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17490 1761..1907 +
1681462911.2453265-CDS-Ecto-sp13_S_contig17490:2339..24801681462911.2453265-CDS-Ecto-sp13_S_contig17490:2339..2480Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17490 2340..2480 +
1681462911.2546988-CDS-Ecto-sp13_S_contig17490:2999..31041681462911.2546988-CDS-Ecto-sp13_S_contig17490:2999..3104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17490 3000..3104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17490.5255.1prot_Ecto-sp13_S_contig17490.5255.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17490 72..3104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17490.5255.1

>prot_Ecto-sp13_S_contig17490.5255.1 ID=prot_Ecto-sp13_S_contig17490.5255.1|Name=mRNA_Ecto-sp13_S_contig17490.5255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
QFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAVYGGANDPR
MGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVT
LKVLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCV
FGTGDLAGGGMDLDGMGG
back to top

mRNA from alignment at Ecto-sp13_S_contig17490:72..3105+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17490.5255.1 ID=mRNA_Ecto-sp13_S_contig17490.5255.1|Name=mRNA_Ecto-sp13_S_contig17490.5255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3034bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17490:72..3105+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTCGGGATCCTCAGCCCAGATGAAGTGGTGAGAGGAAGTACATTACA
GCAGTAAAGCATCATACAGCAGCAGCACAACAATGAGGTTTCGTTGATGG
TTTATTGATTACGATTGCCTCCTTTCATCTGTAATCTGACAACTTTTAAA
AAGCGGGTGTGCGCAAAGCGTCGACCAGTATCTACGGCTGCTGTGGCTGG
GTGCCATGGAAGAGGAGCGGATGATGCAATCAGGGGATTGGGGATGTATT
TGTGTTATTATGTGGTGGTGCAAGGTGGTGCCCTACTCCTGCTCCTCCTC
TTGTTTGTATGCCACTGCTGCTGGTCGCACTTCATACGCAGACTACTGGT
ATAATTTATTAATTTTATTAATTTGAGGACACTCAGTTGTCAAGAAGAAT
GCGGAGGCCGGAGAACCCTTGCAACGGCGGCAGACATGCATCCTCCCTGT
GCCGACATTGCAAAGCCGATGACACGCACAGGAGTGCTCGTGGGCTTCAA
TAGTATATGATATAAATATGTGCCTGAAGAAAGGAGACGGACGTGTGTAG
TGCATGCAAGAACGGTTTGCGGTAAGTGGCAACCGGACCCTTCTGTTCGT
GCCTCCCCCTCACCCGTGCACCCACACCCGTGCAGCGCCCTGTCGCCATC
ACGCAGGTAGGGCTCCTTTTCGGTGCAGTCTCAAGGCACTACAATAGCTA
CATGATATTGTGTTATGCTATGGTCGAAATTGCACGTTTTGATTTTGGTT
GTGGAGGTGCTACAAAATCCTCATGTACCTGGTACTGCTGAAGCGCTGTA
CTCATAAACGCGCGACATCGAATCTTGAGAACATGTGTCGTCGGGTACGA
CACAGATTAACTCAGTCGTCGGTGTAAGCGTGTGTTTGCTTTGCTGTCCC
TGCGCCGCCCTTCTGCCACGTGTGCGCAAAATTCTCGAGTGTTTGACAGT
TGCTCTCTGAACCCAATATGTACGCTATCTGTGTGTGTGTCTCTCTCTCT
CTCGCTCTCTCTCTTTTTCTCTCTCTCTCTCCCCTCTCTCCCCCCCCCCC
TCTCTCTCTCTCACTCCCTCTCTCTCGATACGCCCGGTCGGACGTTGATG
CATGACCTTTTGCACGAGAGCAGCGTCAGATGTCGGTGTTACAGAAGGTC
AAGGTCAACGACGTCGACATTCCGGAGGGCGTGACAAAGTACGACCTGTA
CAAGGTGCGACACGTGCGATATGCACATGTGCACAAGGTTTTGTCTGAAT
TGTTGGTGAGCGACTACTGTACCTGCTATGCCTCTCGCTGCACGTGCCGA
TTTGGTCGCGCTCGGTTTTCACCCCGTGATTAACTTCTGCGTGGAAGTTG
CTCCCAGCGTTCGTACTGAATGCGATCAATTTACACCGCTTCGATGCGGA
ACCCTCCTGGACCGTGGGGTGAAAGTGTTTCCAGTGAGACTTGTACGTAA
TGAGACTTTCTACGGATGGTGCAGTCCATGTTCACCGCACCCTTTTGAGT
GCTGTATTTTGCGCGGGGGTACACAACTACATTTTCTTGAGAACCTGTTT
TTTTTCTCTGTCCTACATTTCGGAAATGTGCTCGTTTTGTATAGAGGACT
TCGCTGCCCGCAAGAAAACTAATCTCTACCCTAACAGGAAAAACCTGACC
GGTCCTATTTCTGGCTTGACCGTGCTTTTTGTATCGTAGGATGGGAGCGC
CGTATATGGGGGCGCCAACGACCCGCGCATGGGAACCCTGGATTTCAACA
CCCGGTGTCGCACCTGCGATTGCACCTACACCGGCATCGGAGGGAACCAG
GTCAACGACTGCCCCGGGCACTTCGGGCACATGGAGGTGGGTGGGGTCAC
GGCGTGGCTGCTGCTGCTGTTGCTGCTTCTTGTACAACGGTCGTTTTCTG
TCCTGTCGCCCCGGTGGTGTATGTCGTGGCAGGATGGGTACGTGAGAAAA
CACGCCTTGTCGGCATACCGCAAGAAGCGTCATCGCCTTATTGCTGTCGA
AGTTACAGCTTCAGGTTGTCGGCATGCAGGACGTATGATCGCCTTGTTTC
TGTCTACAGTATTTCAGCTTCAATTTGTTGGCGTGCGGTAGGTGCTGCGG
CCTTGTTTCTGCCTTCATTGAAGATTCAATTTGTCGGCATGCAGGAAGTG
CTTTCGTCTCGGTTCTGTCTTACTCCACGATGAACCGTCTCTCGGGCGGC
GCTTGCTCCTGCTCCAATGCGCGCGCGGAAACTCTCTCTCGCTTTTTACG
CGGGAAACCGCGATACAGCTGGCGAGGCCGGTGTACCACTGCGGGTTCCT
GGACGTGACACTCAAGGTGTTGCGGAGCGTGTGTTTTCACTGCTCGCGCC
TGAGGTTCGACAAGTCCGACATGAAGTACAAGCGAGCCCTGCTTATCAAG
AACCCGAAGGTATTTCGTTCCTTCCCGGGTTGGCTCGTGCCGTCCCATCC
CGTTTAAGTGTCGTTCGTGTAGTGGTTGGTTGGTTGTTTGGTTGCTGGAA
CGAAGAAGTTGGCGTGTATTCGATTGTACTGCTGCTTGTGGTGATGCTTT
TTGGCGGCTTTGGCTCTGCGTGTTGCTGACGTACGCGCGCTTTGCACGTC
ATGTTGGGGGTACGTGCGTTGTTTTGGCGGGACAAGCAACACCCCGTTCC
CTTTCCGCCCTGAATCCCTTGTCGAAACGCCTACGACAGCAGCACTCGCA
GGCTGTGGTCCACATCAGACACCGCCGGTGCCTAGTTTGTTGCTCGGAGA
GCACTAGTAGAACCACAAACGGCAGTTTGTACACCACTTTGGATAACTTG
CAAGTTTTTTCCCGTGACTTTTGTCATGTATCTGAGGTGAAAATGTGATG
AGAGAGAAAAAATCCTTTAAAGGCCACCACAAAAAACCAGTAATCAGACC
GCGTGCACTCGCCCCTACCTCGGCGCAGACGAGGCTGAGCTACATCCACG
AGCACTGCCGCAACGCGAAAAAGTGCGTCTTCGGGACGGGTGATCTGGCG
GGCGGCGGGATGGACCTTGACGGCATGGGCGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17490:72..3105+

>mRNA_Ecto-sp13_S_contig17490.5255.1 ID=mRNA_Ecto-sp13_S_contig17490.5255.1|Name=mRNA_Ecto-sp13_S_contig17490.5255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17490:72..3105+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTCGGGATCCTCAGCCCAGATGAAGTGCGTCAGATGTCGGTGTTACA
GAAGGTCAAGGTCAACGACGTCGACATTCCGGAGGGCGTGACAAAGTACG
ACCTGTACAAGGATGGGAGCGCCGTATATGGGGGCGCCAACGACCCGCGC
ATGGGAACCCTGGATTTCAACACCCGGTGTCGCACCTGCGATTGCACCTA
CACCGGCATCGGAGGGAACCAGGTCAACGACTGCCCCGGGCACTTCGGGC
ACATGGAGCTGGCGAGGCCGGTGTACCACTGCGGGTTCCTGGACGTGACA
CTCAAGGTGTTGCGGAGCGTGTGTTTTCACTGCTCGCGCCTGAGGTTCGA
CAAGTCCGACATGAAGTACAAGCGAGCCCTGCTTATCAAGAACCCGAAGA
CGAGGCTGAGCTACATCCACGAGCACTGCCGCAACGCGAAAAAGTGCGTC
TTCGGGACGGGTGATCTGGCGGGCGGCGGGATGGACCTTGACGGCATGGG
CGGG
back to top