prot_Ecto-sp13_S_contig17357.5182.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17357.5182.1
Unique Nameprot_Ecto-sp13_S_contig17357.5182.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length166
Homology
BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: D8LGI0_ECTSI (SFM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI0_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.430e-28
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 0
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSDKTLLATGAADKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRYMGTAS 100
            SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTG+ WHPEAYSSDKTLLA      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRY+GTAS
Sbjct:  272 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWHPEAYSSDKTLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRYLGTAS 371          
BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: D8LGJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ1_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 7.410e-13
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 0
Query:   21 IENLEMRKVLRGHSERVTGIAWHPEAYSSDKTLLATGAADK 61
            +++LEM+KVLR HSERVTG+AW PEA+ SDKTLLATGAADK
Sbjct:    2 LKSLEMQKVLRRHSERVTGVAWPPEAHFSDKTLLATGAADK 42          
BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: M4B2G3_HYAAE (SFM domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2G3_HYAAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.230e-11
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 0
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHP-EAYSS-----DKTLLATGAAD 60
            S DGG VA+GSW+ LVK+WD  N    KV RGH +RVTG+AWHP +A+S      D   L +G+AD
Sbjct:  255 SADGGHVATGSWSSLVKVWDATNANEVKVFRGHEDRVTGVAWHPTKAFSEMTDSGDSVCLCSGSAD 320          
BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: A0A3F2S1S9_9STRA (SFM domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1S9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.140e-10
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 0
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSDKT------LLATGAAD 60
            S DG  VA+GSW+ LVK+WD  N    KV RGH +RVTG+AWHP    S+ T       L +G+AD
Sbjct:  259 SADGAHVATGSWSSLVKVWDATNAAEIKVFRGHEDRVTGVAWHPNNTFSEMTDGTDSVCLCSGSAD 324          
BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: A0A2P4X876_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X876_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 7.900e-10
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 0
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSDKT------LLATGAAD 60
            S DG  VA+GSW+ LVK+WD  +    KV RGH +RVTG+AWHP    S+ T       L +G+AD
Sbjct:  257 SADGNHVATGSWSSLVKVWDASSANEVKVFRGHEDRVTGVAWHPNNVFSEMTDGADSVCLCSGSAD 322          
BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: A0A2P6V6K8_9CHLO (U4 U6 small nuclear ribonucleo PRP4 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V6K8_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.200e-9
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSDK----TLLATGAAD 60
            SPDG  +A+G+W+  +KLW + +L  R  +  H+ERVTG+AWHPEA ++ +      LATGA D
Sbjct:  226 SPDGTQLATGAWSGTLKLWSMPSLTKRLTVNAHAERVTGVAWHPEASTTGRMEEAVTLATGATD 289          
BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: S9VU57_SCHCR (U4/U6 X U5 tri-snRNP complex subunit Prp4 family protein n=1 Tax=Schizosaccharomyces cryophilus (strain OY26 / ATCC MYA-4695 / CBS 11777 / NBRC 106824 / NRRL Y48691) TaxID=653667 RepID=S9VU57_SCHCR)

HSP 1 Score: 65.5 bits (158), Expect = 2.150e-9
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 0
Query:    3 DGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYS----SDKTLLATGAAD 60
            DG T A+GSW+  VK+WD ++L   ++ RGH+++V+G+ WHP+  +    S+K  LATGAAD
Sbjct:  188 DGDTFATGSWSGQVKVWDTKDLSQVRLYRGHTDKVSGLDWHPDCTTWDETSEKICLATGAAD 249          
BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: T0QUF2_SAPDV (SFM domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QUF2_SAPDV)

HSP 1 Score: 65.5 bits (158), Expect = 2.200e-9
Identity = 27/60 (45.00%), Postives = 45/60 (75.00%), Query Frame = 0
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSDKTLLATGAAD 60
            SPD   +A+GSW+  VK+W+ ++ ++   L GH++R+TG+AWHP A +++  +LA+GAAD
Sbjct:  229 SPDASLLATGSWSSNVKIWNSKSCDLVHTLTGHTDRITGLAWHP-ASTTESPILASGAAD 287          
BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: R1CZ92_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CZ92_EMIHU)

HSP 1 Score: 64.7 bits (156), Expect = 4.050e-9
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 0
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEA--YSSDKTLLATGAAD 60
            +P GGT A+GSW+ ++KLW + +      LRGH+ER++G+AWHP+A   SS +  L +   D
Sbjct:  233 APGGGTCATGSWSSVIKLWSVPDCTQVATLRGHTERISGLAWHPQADKRSSGEAALVSAGCD 294          
BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: A0A2P6TBB7_CHLSO (U4 U6 small nuclear ribonucleo PRP4 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TBB7_CHLSO)

HSP 1 Score: 64.3 bits (155), Expect = 5.590e-9
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = 0
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSDK----TLLATGAAD 60
            SPDG  +A+G+W+  +K+W + +L+ +  ++ H+ERVTG+AWHPEA ++ +      LA+GA D
Sbjct:  227 SPDGSQLATGAWSGTLKVWAMPSLQKQLTIKAHAERVTGVAWHPEASTTGRMEAAVTLASGATD 290          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI0_ECTSI4.430e-2891.00SFM domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LGJ1_ECTSI7.410e-1378.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
M4B2G3_HYAAE2.230e-1153.03SFM domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A3F2S1S9_9STRA5.140e-1050.00SFM domain-containing protein n=3 Tax=Phytophthora... [more]
A0A2P4X876_9STRA7.900e-1048.48U4/U6 small nuclear ribonucleoprotein Prp4 (Fragme... [more]
A0A2P6V6K8_9CHLO1.200e-946.88U4 U6 small nuclear ribonucleo PRP4 n=1 Tax=Micrac... [more]
S9VU57_SCHCR2.150e-946.77U4/U6 X U5 tri-snRNP complex subunit Prp4 family p... [more]
T0QUF2_SAPDV2.200e-945.00SFM domain-containing protein n=2 Tax=Saprolegnia ... [more]
R1CZ92_EMIHU4.050e-943.55Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A2P6TBB7_CHLSO5.590e-942.19U4 U6 small nuclear ribonucleo PRP4 n=1 Tax=Chlore... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 54..68
score: 39.98
coord: 7..21
score: 32.51
coord: 96..110
score: 30.06
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 112..151
e-value: 0.0061
score: 25.8
coord: 23..67
e-value: 1.8E-6
score: 37.5
coord: 70..109
e-value: 1.8E-8
score: 44.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 71..109
e-value: 6.3E-5
score: 23.7
coord: 120..151
e-value: 0.0079
score: 17.0
coord: 28..67
e-value: 2.0E-6
score: 28.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 30..76
score: 14.084
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..29
score: 9.506
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 77..118
score: 13.449
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 119..160
score: 12.246
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..166
e-value: 1.9E-49
score: 170.2
NoneNo IPR availablePANTHERPTHR19846WD40 REPEAT PROTEINcoord: 1..166
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 96..110
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 54..68
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..166
score: 39.891
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 1..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17357contigEcto-sp13_S_contig17357:1596..3698 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17357.5182.1mRNA_Ecto-sp13_S_contig17357.5182.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17357 1596..3698 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17357.5182.1 ID=prot_Ecto-sp13_S_contig17357.5182.1|Name=mRNA_Ecto-sp13_S_contig17357.5182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSD
KTLLATGAADKTAKLWDCHTGECVQTFHGHAGRLARVGFHPSGRYMGTAS
FDHTWRLWDAETGEELLLQDGHHKEVYGISFQADGALVATGDLGGVGRVW
DLRSGKSVWTMEGHVK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf