mRNA_Ecto-sp13_S_contig17357.5182.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17357.5182.1
Unique NamemRNA_Ecto-sp13_S_contig17357.5182.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: D8LGI0_ECTSI (SFM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI0_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.430e-28
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSDKTLLATGAADKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRYMGTAS 300
            SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTG+ WHPEAYSSDKTLLA      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRY+GTAS
Sbjct:  272 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWHPEAYSSDKTLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRYLGTAS 371
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BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: D8LGJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ1_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 7.410e-13
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   61 IENLEMRKVLRGHSERVTGIAWHPEAYSSDKTLLATGAADK 183
            +++LEM+KVLR HSERVTG+AW PEA+ SDKTLLATGAADK
Sbjct:    2 LKSLEMQKVLRRHSERVTGVAWPPEAHFSDKTLLATGAADK 42
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BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: M4B2G3_HYAAE (SFM domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2G3_HYAAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.230e-11
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHP-EAYSS-----DKTLLATGAAD 180
            S DGG VA+GSW+ LVK+WD  N    KV RGH +RVTG+AWHP +A+S      D   L +G+AD
Sbjct:  255 SADGGHVATGSWSSLVKVWDATNANEVKVFRGHEDRVTGVAWHPTKAFSEMTDSGDSVCLCSGSAD 320
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BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: A0A3F2S1S9_9STRA (SFM domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1S9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.140e-10
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSDKT------LLATGAAD 180
            S DG  VA+GSW+ LVK+WD  N    KV RGH +RVTG+AWHP    S+ T       L +G+AD
Sbjct:  259 SADGAHVATGSWSSLVKVWDATNAAEIKVFRGHEDRVTGVAWHPNNTFSEMTDGTDSVCLCSGSAD 324
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BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: A0A2P4X876_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X876_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 7.900e-10
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSDKT------LLATGAAD 180
            S DG  VA+GSW+ LVK+WD  +    KV RGH +RVTG+AWHP    S+ T       L +G+AD
Sbjct:  257 SADGNHVATGSWSSLVKVWDASSANEVKVFRGHEDRVTGVAWHPNNVFSEMTDGADSVCLCSGSAD 322
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BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: A0A2P6V6K8_9CHLO (U4 U6 small nuclear ribonucleo PRP4 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V6K8_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.200e-9
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSDK----TLLATGAAD 180
            SPDG  +A+G+W+  +KLW + +L  R  +  H+ERVTG+AWHPEA ++ +      LATGA D
Sbjct:  226 SPDGTQLATGAWSGTLKLWSMPSLTKRLTVNAHAERVTGVAWHPEASTTGRMEEAVTLATGATD 289
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BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: S9VU57_SCHCR (U4/U6 X U5 tri-snRNP complex subunit Prp4 family protein n=1 Tax=Schizosaccharomyces cryophilus (strain OY26 / ATCC MYA-4695 / CBS 11777 / NBRC 106824 / NRRL Y48691) TaxID=653667 RepID=S9VU57_SCHCR)

HSP 1 Score: 65.5 bits (158), Expect = 2.150e-9
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    7 DGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYS----SDKTLLATGAAD 180
            DG T A+GSW+  VK+WD ++L   ++ RGH+++V+G+ WHP+  +    S+K  LATGAAD
Sbjct:  188 DGDTFATGSWSGQVKVWDTKDLSQVRLYRGHTDKVSGLDWHPDCTTWDETSEKICLATGAAD 249
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BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: T0QUF2_SAPDV (SFM domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QUF2_SAPDV)

HSP 1 Score: 65.5 bits (158), Expect = 2.200e-9
Identity = 27/60 (45.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSDKTLLATGAAD 180
            SPD   +A+GSW+  VK+W+ ++ ++   L GH++R+TG+AWHP A +++  +LA+GAAD
Sbjct:  229 SPDASLLATGSWSSNVKIWNSKSCDLVHTLTGHTDRITGLAWHP-ASTTESPILASGAAD 287
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BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: R1CZ92_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CZ92_EMIHU)

HSP 1 Score: 64.7 bits (156), Expect = 4.050e-9
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEA--YSSDKTLLATGAAD 180
            +P GGT A+GSW+ ++KLW + +      LRGH+ER++G+AWHP+A   SS +  L +   D
Sbjct:  233 APGGGTCATGSWSSVIKLWSVPDCTQVATLRGHTERISGLAWHPQADKRSSGEAALVSAGCD 294
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BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Match: A0A2P6TBB7_CHLSO (U4 U6 small nuclear ribonucleo PRP4 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TBB7_CHLSO)

HSP 1 Score: 64.3 bits (155), Expect = 5.590e-9
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSDK----TLLATGAAD 180
            SPDG  +A+G+W+  +K+W + +L+ +  ++ H+ERVTG+AWHPEA ++ +      LA+GA D
Sbjct:  227 SPDGSQLATGAWSGTLKVWAMPSLQKQLTIKAHAERVTGVAWHPEASTTGRMEAAVTLASGATD 290
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17357.5182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI0_ECTSI4.430e-2891.00SFM domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LGJ1_ECTSI7.410e-1378.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
M4B2G3_HYAAE2.230e-1153.03SFM domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A3F2S1S9_9STRA5.140e-1050.00SFM domain-containing protein n=3 Tax=Phytophthora... [more]
A0A2P4X876_9STRA7.900e-1048.48U4/U6 small nuclear ribonucleoprotein Prp4 (Fragme... [more]
A0A2P6V6K8_9CHLO1.200e-946.88U4 U6 small nuclear ribonucleo PRP4 n=1 Tax=Micrac... [more]
S9VU57_SCHCR2.150e-946.77U4/U6 X U5 tri-snRNP complex subunit Prp4 family p... [more]
T0QUF2_SAPDV2.200e-945.00SFM domain-containing protein n=2 Tax=Saprolegnia ... [more]
R1CZ92_EMIHU4.050e-943.55Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A2P6TBB7_CHLSO5.590e-942.19U4 U6 small nuclear ribonucleo PRP4 n=1 Tax=Chlore... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17357contigEcto-sp13_S_contig17357:1596..3698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score118.6
Seed ortholog evalue2.7e-24
Seed eggNOG ortholog2880.D8LGI0
Model size498
KEGG koko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015030,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0017069,GO:0017070,GO:0030532,GO:0030621,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046540,GO:0070013,GO:0071001,GO:0071005,GO:0071011,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Exons5
EggNOG free text desc.U4 snRNA binding
EggNOG OGsKOG0272@1,KOG0272@2759
Cds size498
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462905.6850843-CDS-Ecto-sp13_S_contig17357:1595..16941681462905.6850843-CDS-Ecto-sp13_S_contig17357:1595..1694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17357 1596..1694 -
1681462905.6979558-CDS-Ecto-sp13_S_contig17357:2086..21281681462905.6979558-CDS-Ecto-sp13_S_contig17357:2086..2128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17357 2087..2128 -
1681462905.7077072-CDS-Ecto-sp13_S_contig17357:2483..26581681462905.7077072-CDS-Ecto-sp13_S_contig17357:2483..2658Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17357 2484..2658 -
1681462905.7183375-CDS-Ecto-sp13_S_contig17357:3309..34251681462905.7183375-CDS-Ecto-sp13_S_contig17357:3309..3425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17357 3310..3425 -
1681462905.72707-CDS-Ecto-sp13_S_contig17357:3632..36981681462905.72707-CDS-Ecto-sp13_S_contig17357:3632..3698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17357 3633..3698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17357.5182.1prot_Ecto-sp13_S_contig17357.5182.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17357 1596..3698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17357.5182.1

>prot_Ecto-sp13_S_contig17357.5182.1 ID=prot_Ecto-sp13_S_contig17357.5182.1|Name=mRNA_Ecto-sp13_S_contig17357.5182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
SPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGIAWHPEAYSSD
KTLLATGAADKTAKLWDCHTGECVQTFHGHAGRLARVGFHPSGRYMGTAS
FDHTWRLWDAETGEELLLQDGHHKEVYGISFQADGALVATGDLGGVGRVW
DLRSGKSVWTMEGHVK
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mRNA from alignment at Ecto-sp13_S_contig17357:1596..3698-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17357.5182.1 ID=mRNA_Ecto-sp13_S_contig17357.5182.1|Name=mRNA_Ecto-sp13_S_contig17357.5182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2103bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17357:1596..3698- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCCGGACGGGGGCACAGTAGCGTCGGGAAGCTGGACCTGCCTGGTGAA
GCTGTGGGACATAGAGGTAGGCAAGGCCGAACCATCCTTGCCTGTGAAGA
GACTCACGGCTTCCACATGAATATCTAGTATTTACAAGGATTTGTGGCGT
CATGTTTTTTTTTCCCTTGGGTCGTCTTCTCGCCACTACGCCTCACGCAT
TTCCACAACGGTTTTTCTTTGCGAAGCCAATCTGCTCGTCTTTCTTTGCA
TCTTCCTGGACGATGTGCCGCAGAACCTGGAGATGCGCAAGGTACTGCGA
GGGCACAGCGAGAGAGTGACCGGCATCGCATGGCATCCGGAAGCCTACTC
CTCGGACAAAACGTTGTTGGCAACCGGCGCCGCGGACAAGTGAGTCCGCT
GTTGGTCGGCCTCGGGGGTGTTGCTCTCTTGCTTCCGTTTGTGGTTGGGT
GCAGTTGTTTGCTGTATTCGATGGTGTGGGTTTCGTCGGTCGCCGCTGCT
ACTCTTGCTGTTGCTCCAATGATCGTTGGGTTTCCAGAGTGAATGTTGGT
TGTTGTGGTTGCTATGGTTGCTATTCTTTCCCGTCTTTCGTGGTGTTAAC
TGCGTGGTGTTGGGAAACATTTGTTGTTTAGCTCGTGTTGAAAACAGCCC
GTTACCTCGCTTTCGAGTCAAACCGAGCAGAGGAAAACTGCCGAGCGGCA
GAGCGGCATGACTGCAACGGGGATTCTCGTCCTTTACTCCCGCCTTCCAG
TCCAGTGTCGAAATCGCTTCTTGTTGTAGCAATTCAAACCAAGCTCGAAA
GAGAAAGGCAAAGGCTTTCTAAACCAACGGAATATCCCTCCGACTCCTTT
CGGCCATGGCACACCCATGCACACCCATTTGCCTCTACCGCGGTCGCCAT
TGGCTACTCTCCCCGAAAGTATCCAAGTCACACCAAGCGACAAAAGGCAA
ACGCCAGGGCCTTCCTTGCACACACGACCACCTGTGCCTGAATCCTTCGT
ACATTACGTAAGCATCCCAATTTAAACAAAAACCAAACAGGACGGCCAAG
CTGTGGGACTGCCACACGGGGGAGTGCGTGCAGACTTTTCACGGTCACGC
GGGGCGGCTGGCGAGGGTGGGTTTCCACCCTAGCGGGCGTTACATGGGCA
CCGCGAGCTTCGACCACACGTGGAGACTGTGGGACGCGGAGACGGGGGAG
GAGTTGCTCTTGCAGGTTTGCCAGCGGGGTTAGTGTGTTGTGCGTGTTTC
TTTGCAGATGCCGTGCAACTATTATGGCTGTTGTGTTGCTGTTGGTGTTG
TTGTTGCTCTTCTCGTACGATTGTGTTGTTGTTGTCGTCGTCGTTGTTGT
TGTTGTTGTTGTTTGTGGCATTGTCGTTTATTTAGGTGACTTTTTCTTTG
AATTTGCGCTCGTTGTCCGGCAATGACACCACTATCTCCTTTTGTGTATC
GCCTCCTGCTGTGTTTTCCCGCTGTTTTCTCGTTCTTTGCCTTCTTTTCT
TCAACGAACTTATCTCATGTTCTCCTTTTGTGTTTGCCCTCTGCTTGATT
TCGCATGATCCCCTTGACAGGACGGCCACCACAAGGAAGTGTACGGGATT
TCTTTCCAGGCGGTGAGACAATTTCCGTGCAACCAGAGCTATTTCCAACC
AACCCCGTTGTGGTGTTGACAACAAACCCGTTGTTGTGTTGACAACATTT
TCGGGTTTGATCTTCGGTGTTTGGAAAGTCGTCGCCAGTTTGCTGATTTG
CTTCGATTTGTTGTTCGGCGTATACCCAGGGCTTGAGGCGGGAGATGACC
GCGGCGGCGGCGACCATCCCTCCGCTAGCACTTCATTCCAGTATTTTTTT
TATTCCATCCACAGGGCCATCATGGTCATCCGCCCCCCTCCCCCCCCCCC
CCCCCCTGAGATCTAGAATTCTCAGAAAGTGATTTTGCAAGACTACAGGG
GACCGGTCATGTGTTTGACCGTTCTCATGTTTCCTGTTTTCGTGCTTATT
CCAGGACGGTGCTCTGGTGGCTACCGGAGACCTAGGTGGGGTGGGCCGTG
TGTGGGATCTGCGGTCGGGCAAGAGCGTGTGGACCATGGAGGGGCACGTC
AAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17357:1596..3698-

>mRNA_Ecto-sp13_S_contig17357.5182.1 ID=mRNA_Ecto-sp13_S_contig17357.5182.1|Name=mRNA_Ecto-sp13_S_contig17357.5182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17357:1596..3698- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCCGGACGGGGGCACAGTAGCGTCGGGAAGCTGGACCTGCCTGGTGAA
GCTGTGGGACATAGAGAACCTGGAGATGCGCAAGGTACTGCGAGGGCACA
GCGAGAGAGTGACCGGCATCGCATGGCATCCGGAAGCCTACTCCTCGGAC
AAAACGTTGTTGGCAACCGGCGCCGCGGACAAGACGGCCAAGCTGTGGGA
CTGCCACACGGGGGAGTGCGTGCAGACTTTTCACGGTCACGCGGGGCGGC
TGGCGAGGGTGGGTTTCCACCCTAGCGGGCGTTACATGGGCACCGCGAGC
TTCGACCACACGTGGAGACTGTGGGACGCGGAGACGGGGGAGGAGTTGCT
CTTGCAGGACGGCCACCACAAGGAAGTGTACGGGATTTCTTTCCAGGCGG
ACGGTGCTCTGGTGGCTACCGGAGACCTAGGTGGGGTGGGCCGTGTGTGG
GATCTGCGGTCGGGCAAGAGCGTGTGGACCATGGAGGGGCACGTCAAG
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