prot_Ecto-sp13_S_contig17297.5155.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17297.5155.1
Unique Nameprot_Ecto-sp13_S_contig17297.5155.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length223
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17297.5155.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..220
e-value: 4.7E-37
score: 129.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 5..125
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 99..204
NoneNo IPR availablePFAMPF13424TPR_12coord: 148..204
e-value: 4.3E-10
score: 39.7
coord: 79..125
e-value: 2.3E-7
score: 31.0
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 5..124
coord: 133..204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17297contigEcto-sp13_S_contig17297:611..3666 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17297.5155.1mRNA_Ecto-sp13_S_contig17297.5155.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17297 549..3714 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17297.5155.1 ID=prot_Ecto-sp13_S_contig17297.5155.1|Name=mRNA_Ecto-sp13_S_contig17297.5155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=223bp
MLDLDNPDLAARLSNRASVLRAQASGWKIPEAKSLSLRATDIGEKTLGAE
HPGHAAILTTRAWVLAAQVRAASILHGTLPEADSLCLRAIDIGEETLGPD
HPDLAGWLNDRAVLLEKLGNYAEAAPPSFLATDMAERTLAPDHPRLSVLL
SNRASLLEKQGGYPQADSLYLRAIDIGERTLGTDHPDCARWLVNRASLLQ
KMGNTLRQTVCTFERSILERKR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf