mRNA_Ecto-sp13_S_contig17297.5155.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17297.5155.1
Unique NamemRNA_Ecto-sp13_S_contig17297.5155.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17297.5155.1 vs. uniprot
Match: A0A6H5L045_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L045_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.620e-11
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 3 
Query:  654 GQYAEADSLYLRAIDIGEETLGPDHPDLAGWLNDRAVLLEK 776
            G+YAEAD LYLRAIDIG++ LGPDHPDLA WLN+RA LL+K
Sbjct:   10 GKYAEADPLYLRAIDIGKKMLGPDHPDLAAWLNNRAGLLKK 50
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BLAST of mRNA_Ecto-sp13_S_contig17297.5155.1 vs. uniprot
Match: D8LLM3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.470e-10
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 3 
Query:  654 GQYAEADSLYLRAIDIGEETLGPDHPDLAGWLNDRAVLLEK 776
            G+  EAD LYLRAI++GE+ LGPDHPDLA WLN++AVLL K
Sbjct:    8 GEDTEADPLYLRAIEVGEKKLGPDHPDLATWLNNQAVLLRK 48
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BLAST of mRNA_Ecto-sp13_S_contig17297.5155.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 7.320e-8
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 3 
Query:  654 GQYAEADSLYLRAIDIGEETLGPDHPDLAGWLNDRAV 764
            G+Y EAD LYLRA++IGE+TLGPDHP LA WLN++A 
Sbjct:    8 GKYEEADPLYLRAVEIGEKTLGPDHPTLAVWLNNKAA 44
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BLAST of mRNA_Ecto-sp13_S_contig17297.5155.1 vs. uniprot
Match: A0A6H5K2T5_9PHAE (PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.370e-7
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 3 
Query:  645 TKNGQYAEADSLYLRAIDIGEETLGPDHPDLAGWLNDRAVLL 770
            T  G+YAEAD L LRA+DIG+  LGPDHPDLA WL +RA LL
Sbjct:  551 TLQGKYAEADPLILRAMDIGKSPLGPDHPDLALWLGNRACLL 592
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BLAST of mRNA_Ecto-sp13_S_contig17297.5155.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.260e-7
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  654 GQYAEADSLYLRAIDIGEETLGPDHPDLAGWLNDRAVLL 770
            G+YAEAD LYLRAI+IGE TLGPDHP LA  LN+RA LL
Sbjct:  613 GKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRAGLL 651
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BLAST of mRNA_Ecto-sp13_S_contig17297.5155.1 vs. uniprot
Match: A0A7S3NLA4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLA4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.270e-7
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 3 
Query:  654 GQYAEADSLYLRAIDIGEETLGPDHPDLAGWLNDRAVLL 770
            G+Y EA  L  RAI+IGEE+LGP+HPDL  WLN+ AVLL
Sbjct:    1 GKYDEAKPLVQRAIEIGEESLGPNHPDLVSWLNNLAVLL 39
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BLAST of mRNA_Ecto-sp13_S_contig17297.5155.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 9.630e-7
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 3 
Query:  654 GQYAEADSLYLRAIDIGEETLGPDHPDLAGWLNDRAVLL 770
            G +AEAD   LRAI+IGE+ LGP+HPDLA WLN+RA LL
Sbjct:  644 GNFAEADPFNLRAIEIGEKVLGPEHPDLAVWLNNRAELL 682
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17297.5155.1 vs. uniprot
Match: D8LPW2_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.100e-6
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 3 
Query:  654 GQYAEADSLYLRAIDIGEETLGPDHPDLAGWLNDRA 761
            G+Y E D LYLRAI+IGE+TLGPDHP LA  LN+RA
Sbjct:   51 GKYDEGDPLYLRAIEIGEKTLGPDHPALATSLNNRA 86
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17297.5155.1 vs. uniprot
Match: A0A6H5KSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC7_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.320e-5
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:  648 KNGQYAEADSLYLRAIDIGEETLGPDHPDLAGWLNDRAVLL 770
            K G++AEAD LYLRAI++ E+ LG DHPDLA  +N+RA LL
Sbjct:  339 KQGKHAEADPLYLRAIEVAEKMLGRDHPDLATSINNRAELL 379
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17297.5155.1 vs. uniprot
Match: D8LQL3_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL3_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.570e-5
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:  648 KNGQYAEADSLYLRAIDIGEETLGPDHPDLAGWLNDRAVLL 770
            + G+Y EAD L LR I++GE+TLGPDHPD+A  LN+RA LL
Sbjct:  296 RQGKYVEADRLCLRDIEMGEDTLGPDHPDVAIRLNNRAELL 336
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17297.5155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5L045_9PHAE4.620e-1178.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLM3_ECTSI3.470e-1070.73Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5K0C4_9PHAE7.320e-870.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2T5_9PHAE1.370e-769.05PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=E... [more]
D7G6W2_ECTSI2.260e-776.92NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A7S3NLA4_9STRA3.270e-766.67Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A6H5JJK0_9PHAE9.630e-769.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPW2_ECTSI2.100e-672.22TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KSC7_9PHAE1.320e-563.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQL3_ECTSI1.570e-563.41TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17297contigEcto-sp13_S_contig17297:549..3714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size779
Hectar predicted targeting categoryother localisation
Exons6
Cds size669
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17297.5155.1prot_Ecto-sp13_S_contig17297.5155.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17297 611..3666 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.4414508-UTR-Ecto-sp13_S_contig17297:548..6101681462903.4414508-UTR-Ecto-sp13_S_contig17297:548..610Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17297 549..610 -
1681462903.508864-UTR-Ecto-sp13_S_contig17297:3666..37141681462903.508864-UTR-Ecto-sp13_S_contig17297:3666..3714Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17297 3667..3714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.4501429-CDS-Ecto-sp13_S_contig17297:610..6731681462903.4501429-CDS-Ecto-sp13_S_contig17297:610..673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17297 611..673 -
1681462903.458103-CDS-Ecto-sp13_S_contig17297:1103..12291681462903.458103-CDS-Ecto-sp13_S_contig17297:1103..1229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17297 1104..1229 -
1681462903.4749513-CDS-Ecto-sp13_S_contig17297:2199..23251681462903.4749513-CDS-Ecto-sp13_S_contig17297:2199..2325Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17297 2200..2325 -
1681462903.4832923-CDS-Ecto-sp13_S_contig17297:2665..27811681462903.4832923-CDS-Ecto-sp13_S_contig17297:2665..2781Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17297 2666..2781 -
1681462903.4910002-CDS-Ecto-sp13_S_contig17297:3131..32911681462903.4910002-CDS-Ecto-sp13_S_contig17297:3131..3291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17297 3132..3291 -
1681462903.5009491-CDS-Ecto-sp13_S_contig17297:3588..36661681462903.5009491-CDS-Ecto-sp13_S_contig17297:3588..3666Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17297 3589..3666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17297.5155.1

>prot_Ecto-sp13_S_contig17297.5155.1 ID=prot_Ecto-sp13_S_contig17297.5155.1|Name=mRNA_Ecto-sp13_S_contig17297.5155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=223bp
MLDLDNPDLAARLSNRASVLRAQASGWKIPEAKSLSLRATDIGEKTLGAE
HPGHAAILTTRAWVLAAQVRAASILHGTLPEADSLCLRAIDIGEETLGPD
HPDLAGWLNDRAVLLEKLGNYAEAAPPSFLATDMAERTLAPDHPRLSVLL
SNRASLLEKQGGYPQADSLYLRAIDIGERTLGTDHPDCARWLVNRASLLQ
KMGNTLRQTVCTFERSILERKR*
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mRNA from alignment at Ecto-sp13_S_contig17297:549..3714-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17297.5155.1 ID=mRNA_Ecto-sp13_S_contig17297.5155.1|Name=mRNA_Ecto-sp13_S_contig17297.5155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3166bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17297:549..3714- (Ectocarpus species13 EcNAP12_S_4_19m)
TATGCTGAAGCAGATGCTCTGTACCTTCGAGCTATCAAGATTGGAGAGAT
GCTAGACCTTGACAACCCCGATCTTGCTGCAAGGCTCAGCAACCGGGCGT
CGGTGTTAAGGGCGCAGGCGAGTGGTGTGTTTCAGGAATGGTGCGGAGAA
TGTGAGTGAAGTAGGTACGGTTTCATTTGTGGTTGTCTCATAGCACTCTT
CGTTCCCGGTTGGCTGATGCCATACGAAATCAACCCTTGTGAACATGTGA
AATCTGGTCGGGCTGAGCTACTCTATGGCCGAGCTAATCTACATAAGAGT
ATCCACACGAACGACTTACAGCTAAACATAGGCCCGTCTTTTTGTTTCAT
TTGTGTGTTTCTCTCTGTCATGAACTTCACTATCGTTGCTAACTTGCCCA
TCCCATTCTCTCATCATGCCTAGTGGAAGATTCCTGAGGCGAAATCTCTG
TCCCTTCGAGCTACCGACATTGGGGAGAAGACTCTAGGCGCTGAGCACCC
TGGCCATGCTGCAATTCTCACTACTCGGGCGTGGGTGCTAGCGGCACAGG
TTAGAGCCGCCAGCATTTTGCATGGAACTTTGCGTGGTTGCCCTTGGAAG
TTGTTGTGGACTATTGACCAGTCAAGCAAAGTCGAGAGCGTTTCGTGGAA
CTTTCGATTGTGTCCAAGAAATGTGTTTGTGACGTATTTTCATTTTTTCC
GGTAGGCGGCCGCCTGAAAACAACAGCCCTGTAGCTTCCTACACATGAGA
CGTATGCTCAGGCCGAGAAAAGCCATGACCAGGTCAGAAGCTATGCAAGA
TTCGGCACTGGGGCGGGGAGGGTCCGGATATCATTTTGTCGATTTCTTTG
CTTGTTGGGTGAAATGCAGGAGCCCCGACCAATAGTGAGAATTCCATTCT
ACTTTTTCACCCTCATACTCTAGGGCAAGTAAGCTGAGGCGGACAGTCTC
TGCCTTCGAGCCATCGACATTGGGGAGGAAACGCTAGGCCCTGACCACCC
CGATCTTGCGGGATGGCTCAACGACCGGGCGGTATTGTTAGAGAAATTGG
TGAGAGCTGGCAGAGATTACCAGGAAACGTGTACTGGTGACCCATGTAGT
TGATGTGCGGTGGCAGTATCCACTTCGTGTATCATTGGACCATCGTTGGA
TTTCCCACGTATGTTGGTACAGTATTCCGTTTCCGGAGGGCCACGGCCTC
ACAAAGCCCGGTGCTTGCAACAACGGCAAGGACGGCGAGGCTGAGCCATA
GGAGAGGTTGCATTGCATTTGGTACACCTGAGTGAGGCTCGATCGCCCAA
TATCAACGGCATAGATGGGCGTCGTTTCTCATCAACAGTTTTGACTAGCC
TTGACAACGATCCTAGCGCGTATTCCCGTCATACTCCAGGGCAACTATGC
TGAAGCGGCCCCTCCGTCATTCCTAGCCACCGATATGGCGGAGAGGACGT
TGGCGCCTGACCACCCTCGTCTTTCGGTATTGCTTAGCAACCGGGCGTCA
TTGCTAGAGAAGCAGGTACGAACTTACAGAGAAGTCGAGGACGCCCCTCG
CTATGTTGTGATGGATGTTGTTTTGGTTATTGCAGGAACTCCCGGTAGTT
TTAAAGAGCTGTGATGGGCTTCTCTTAGGGGTCATGCATGTGTCGGCGCA
ATGCATCGTGTTTGGTGAGCCAGGGCCCCAAATGCACGGCGCACCTTTGC
GTTTCCCATTACCATCGGTGAAGTCTAGCCACAATGACAGTTGAGCAGGC
ACGTGAAAGCAGACTTAGGGGCTGGGAAGTAGGCCACGACCCAACCGCTC
AACATCAAGGCCATGATTTTCAGCTGATGTTCCTCCTCGATAGGCCTAGA
GAGTGATCCGTCTGTTTCCCGGTCACGTTTCAGGGAAATAATTCTGAGGC
GGACCGCCTGTCTCTTTGAGCCATCGAGATTGGGGAGAAGATGTTGGGCC
CTGACCACCTGCAGCTTGCCACCATACTCGACAATCGGGCGGTACTGTTG
GAGAAACAGGTGAGAGCTAACATCTTTCTAGAAAACGTGTGACCCAAGGA
TGCGGGTGTACCGGTGGAATTATTCACGCCTTTACCAGGTGGACGGACTT
GAGGTTGTCGTTGGAAATGTTGTACCGTGAGCACCCATGTGCTGGCGCGA
TTCGTTTCTGGTGAGCCACCTCAAAATGCCCAGTACTTGTAACAATGACA
TGCTGTTCAGGCCGGTCCATACGAGAAAAGGCCGTGTCTGGAACACCTAG
ATGTGGCTCAACCGCGCAACAACCAGGCGTGGGCGTCGAGCGTTTTCTTT
TCGGCAGAAGGTTCAACTATGACATGCTTTTCAGGCCGGTCCATACGAGA
AAAGGCCGTGTCTGGAACACCTAGATGTGGCTCAACCGCGCAACAACCAG
GCGTGGGCGTCGAGCGTTTTTTTTTCGGCAGAAGGTTCAACTCGTCTTAA
CGCCGATGCTAACGCGTTGTCCGGTCATTCGCCAGGGAGGGTACCCGCAG
GCGGATTCTCTGTATCTTCGAGCCATCGACATTGGGGAGAGGACACTGGG
CACCGACCACCCCGATTGTGCTCGATGGCTTGTCAACCGGGCATCGTTGT
TACAAAAAATGGTGAGATCTTGAAGGAATTTTCAGGAAGGCTCTGGTGAT
GCTCTGCGTGATGTTGTCGTGCGTGTAGGATTTCCCAGTCCGTTTGGAAA
ATTGTGTCGGAGTGCAGGCAAGTGTGGTCGCCTGGCGTCGTGCTTGGTGG
GCCACTGCAGCTTACATACTTTCTTGGCATCGATGGTACGCTGGGGTTAA
GCCACACAAGCACACATGTGTTTGTGCAATATTTTGTTCGTTCCTGGCAG
GCCACGGCCTCACAAATCCCAATGCTTGGGACGATGGCATGCACGTTGAG
GCTGAACCATAGTAGAGAAAGCACTGTGCCTGGAACACCTAGGTGTGGTG
ATGTCGCTCGACAACCGGGCGAGGTTGTTTTGGTGGTCTGCAGTTGACTT
GCCGTCACAACGATGCTGTCACGTTTTCCGTTATACTCCAGGGCAATACG
CTGAGGCAGACAGTCTGTACCTTCGAGCGATCGATATTGGAGAGGAAACG
CTAGGTCCTGACCACCCCGATCTTGCGGGATGGCTCAACGACCGGGCGGT
ATTGTTAGAGAAGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17297:549..3714-

>mRNA_Ecto-sp13_S_contig17297.5155.1 ID=mRNA_Ecto-sp13_S_contig17297.5155.1|Name=mRNA_Ecto-sp13_S_contig17297.5155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17297:549..3714- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTAGACCTTGACAACCCCGATCTTGCTGCAAGGCTCAGCAACCGGGC
GTCGGTGTTAAGGGCGCAGGCGAGTGGTTGGAAGATTCCTGAGGCGAAAT
CTCTGTCCCTTCGAGCTACCGACATTGGGGAGAAGACTCTAGGCGCTGAG
CACCCTGGCCATGCTGCAATTCTCACTACTCGGGCGTGGGTGCTAGCGGC
ACAGGTTAGAGCCGCCAGCATTTTGCATGGAACTTTGCCTGAGGCGGACA
GTCTCTGCCTTCGAGCCATCGACATTGGGGAGGAAACGCTAGGCCCTGAC
CACCCCGATCTTGCGGGATGGCTCAACGACCGGGCGGTATTGTTAGAGAA
ATTGGGCAACTATGCTGAAGCGGCCCCTCCGTCATTCCTAGCCACCGATA
TGGCGGAGAGGACGTTGGCGCCTGACCACCCTCGTCTTTCGGTATTGCTT
AGCAACCGGGCGTCATTGCTAGAGAAGCAGGGAGGGTACCCGCAGGCGGA
TTCTCTGTATCTTCGAGCCATCGACATTGGGGAGAGGACACTGGGCACCG
ACCACCCCGATTGTGCTCGATGGCTTGTCAACCGGGCATCGTTGTTACAA
AAAATGGGCAATACGCTGAGGCAGACAGTCTGTACCTTCGAGCGATCGAT
ATTGGAGAGGAAACGCTAG
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