prot_Ecto-sp13_S_contig1715.5074.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1715.5074.1
Unique Nameprot_Ecto-sp13_S_contig1715.5074.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length224
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1715.5074.1 vs. uniprot
Match: D8LN05_ECTSI (PHD-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN05_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 1.440e-99
Identity = 195/206 (94.66%), Postives = 196/206 (95.15%), Query Frame = 0 
Query:    1 GKLLACREEGCGRRFHMGCLKPPLSRTPKEGEWLCPICRKRKAHADREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXXXXXXXAMKLEERNKQKGKA--GXXXXXXXGDVKREEEAGEEEQDGGAPVLSSLDRRGSFNGDLVQLLQG 204
            GKLLACREEGCGRRFHMGCLKPPLSRTPKEGEW CPICRKRKAHA+REAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERRE XXXXXXXXXXXXXXXXXXX  AMKLEERNKQKGKA  G XXXX  GDVKREEEAGEEEQDGGAPVLSSLD RGSFNGDLVQLLQG
Sbjct:  560 GKLLACREEGCGRRFHMGCLKPPLSRTPKEGEWSCPICRKRKAHAEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERRERXXXXXXXXXXXXXXXXXXXQQAMKLEERNKQKGKAHGGGXXXXASGDVKREEEAGEEEQDGGAPVLSSLDGRGSFNGDLVQLLQG 765
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BLAST of mRNA_Ecto-sp13_S_contig1715.5074.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 7.490e-94
Identity = 189/204 (92.65%), Postives = 191/204 (93.63%), Query Frame = 0 
Query:    1 GKLLACREEGCGRRFHMGCLKPPLSRTPKEGEWLCPICRKRKAHADREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXXXXXXXAMKLEERNKQKGKAGXXXXXXXGDVKREEEAGEEEQDGGAPVLSSLDRRGSFNGDLVQLLQG 204
            GKLLACREEGCGRRFHMGCLKPPLSRTPKEG+W CPICRKR AH +REAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXXXXXXXAMKLEERNKQKGK G       GDVKREEEA EEEQDGGAPVLSSLD RGSFNGDLVQLLQG
Sbjct:  852 GKLLACREEGCGRRFHMGCLKPPLSRTPKEGKWSCPICRKRTAHLEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXXXXXXXAMKLEERNKQKGKVGGGGAGARGDVKREEEAKEEEQDGGAPVLSSLDGRGSFNGDLVQLLQG 1055
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1715.5074.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN05_ECTSI1.440e-9994.66PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KWU5_9PHAE7.490e-9492.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 95..150
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 1..39
e-value: 1.3E-5
score: 34.7
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 2..40
e-value: 2.6E-8
score: 33.6
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 1..41
score: 8.582
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..63
e-value: 3.9E-12
score: 47.6
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 2..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1715contigEcto-sp13_S_contig1715:13329..15558 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1715.5074.1mRNA_Ecto-sp13_S_contig1715.5074.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1715 13327..15558 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1715.5074.1 ID=prot_Ecto-sp13_S_contig1715.5074.1|Name=mRNA_Ecto-sp13_S_contig1715.5074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
GKLLACREEGCGRRFHMGCLKPPLSRTPKEGEWLCPICRKRKAHADREAK
AQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCD
ALRGYEAELEKQREAGERREREEKEAREAAERDRQEAKRAQQAMKLEERN
KQKGKAGGGGAGASGDVKREEEAGEEEQDGGAPVLSSLDRRGSFNGDLVQ
LLQGGGGARAAKRTAMQQMQRDAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD