mRNA_Ecto-sp13_S_contig1715.5074.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1715.5074.1
Unique NamemRNA_Ecto-sp13_S_contig1715.5074.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1715.5074.1 vs. uniprot
Match: D8LN05_ECTSI (PHD-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN05_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 1.440e-99
Identity = 195/206 (94.66%), Postives = 196/206 (95.15%), Query Frame = 1 
Query:    1 GKLLACREEGCGRRFHMGCLKPPLSRTPKEGEWLCPICRKRKAHADREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXXXXXXXAMKLEERNKQKGKA--GXXXXXXXGDVKREEEAGEEEQDGGAPVLSSLDRRGSFNGDLVQLLQG 612
            GKLLACREEGCGRRFHMGCLKPPLSRTPKEGEW CPICRKRKAHA+REAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERRE XXXXXXXXXXXXXXXXXXX  AMKLEERNKQKGKA  G XXXX  GDVKREEEAGEEEQDGGAPVLSSLD RGSFNGDLVQLLQG
Sbjct:  560 GKLLACREEGCGRRFHMGCLKPPLSRTPKEGEWSCPICRKRKAHAEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERRERXXXXXXXXXXXXXXXXXXXQQAMKLEERNKQKGKAHGGGXXXXASGDVKREEEAGEEEQDGGAPVLSSLDGRGSFNGDLVQLLQG 765
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BLAST of mRNA_Ecto-sp13_S_contig1715.5074.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 7.490e-94
Identity = 189/204 (92.65%), Postives = 191/204 (93.63%), Query Frame = 1 
Query:    1 GKLLACREEGCGRRFHMGCLKPPLSRTPKEGEWLCPICRKRKAHADREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXXXXXXXAMKLEERNKQKGKAGXXXXXXXGDVKREEEAGEEEQDGGAPVLSSLDRRGSFNGDLVQLLQG 612
            GKLLACREEGCGRRFHMGCLKPPLSRTPKEG+W CPICRKR AH +REAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXXXXXXXAMKLEERNKQKGK G       GDVKREEEA EEEQDGGAPVLSSLD RGSFNGDLVQLLQG
Sbjct:  852 GKLLACREEGCGRRFHMGCLKPPLSRTPKEGKWSCPICRKRTAHLEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXXXXXXXAMKLEERNKQKGKVGGGGAGARGDVKREEEAKEEEQDGGAPVLSSLDGRGSFNGDLVQLLQG 1055
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1715.5074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN05_ECTSI1.440e-9994.66PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KWU5_9PHAE7.490e-9492.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1715contigEcto-sp13_S_contig1715:13327..15558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score318.9
Seed ortholog evalue1.9e-84
Seed eggNOG ortholog2880.D8LN05
Model size676
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.cellular response to interleukin-11
EggNOG OGsKOG1513@1,KOG1513@2759
Cds size672
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462897.3193989-CDS-Ecto-sp13_S_contig1715:13328..136821681462897.3193989-CDS-Ecto-sp13_S_contig1715:13328..13682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1715 13329..13682 -
1681462897.3315384-CDS-Ecto-sp13_S_contig1715:14238..143371681462897.3315384-CDS-Ecto-sp13_S_contig1715:14238..14337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1715 14239..14337 -
1681462897.3432622-CDS-Ecto-sp13_S_contig1715:15003..151441681462897.3432622-CDS-Ecto-sp13_S_contig1715:15003..15144Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1715 15004..15144 -
1681462897.3520904-CDS-Ecto-sp13_S_contig1715:15480..155581681462897.3520904-CDS-Ecto-sp13_S_contig1715:15480..15558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1715 15481..15558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1715.5074.1prot_Ecto-sp13_S_contig1715.5074.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1715 13329..15558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1715.5074.1

>prot_Ecto-sp13_S_contig1715.5074.1 ID=prot_Ecto-sp13_S_contig1715.5074.1|Name=mRNA_Ecto-sp13_S_contig1715.5074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
GKLLACREEGCGRRFHMGCLKPPLSRTPKEGEWLCPICRKRKAHADREAK
AQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCD
ALRGYEAELEKQREAGERREREEKEAREAAERDRQEAKRAQQAMKLEERN
KQKGKAGGGGAGASGDVKREEEAGEEEQDGGAPVLSSLDRRGSFNGDLVQ
LLQGGGGARAAKRTAMQQMQRDAR
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mRNA from alignment at Ecto-sp13_S_contig1715:13327..15558-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1715.5074.1 ID=mRNA_Ecto-sp13_S_contig1715.5074.1|Name=mRNA_Ecto-sp13_S_contig1715.5074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2232bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1715:13327..15558- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAAGCTGCTGGCCTGCAGGGAGGAGGGCTGCGGGAGACGGTTCCACAT
GGGGTGCCTCAAGCCTCCCCTCTCGAGGGTGAGCCGTGGTTGTTGACGGG
GGCTCGTGTAGTTAGTGATCATGTTGATGTTACCTGACTGGGAGTTGATA
TAGTCATCGCCGTGACCTACTTCAGTAAGCAGATCGTGCGCGAAAACGTC
CTCGACAAGAGCAAAAGGGAGGAACGGCGATGAGAGTATACCTCCAATGA
AAACGGGCTATGCGCCCCCCCGTTCGGCACCTTCGAGGTTACGGATGGCG
CTCCTAAGAATGGACGCTCAGGTAGCTCGTAATTCCTTGCGCCGAAAGTG
TATTGAGGACCACCGCCCGACACCGAATCTCGACTGTTTTTTGTTCATCA
CACCAAACGAACAGACTCCGAAGGAGGGGGAATGGTTGTGTCCCATTTGC
CGCAAGAGGAAAGCGCACGCGGATCGAGAGGCCAAGGCCCAGGCCAAGCG
AGACCAGAAGAAGCGAGAGCTGGCGGCCAAGTTGGCCAAGTCGCCCGTCA
AGACGGTGCGCTTTTTTTTTTTACCTATTAGCACAACAATTTCTGTTCCT
CAACAAGAATCCAGGATAAATTAGCAATGATGTCATTGCGTTAGCGGAGG
CAGTACATGAGTTGTCTACGAGACAACGTCCCCCCTGTGGGGAACAGGCC
CAATGAGACATTTTTTTGCGTTTCTGTTTCTTCTTGGGGGTGGTTTGAGT
ACGAGAGGTGTGCCTTCGCGCCCCCCCTCCTTTTGTTGTATGAGGTCCAT
GTCTCGTGCTGGGGATGGTGTCGCCTCGCAGATGACTGTTGCTACTGTCT
AGGGTTCCGTCTCGTGGACGCCGCTGTCTGTTGTGGTGTTGAATCGAGGA
ATCCTCGTTCCCTCCGTGTAGTCATTCCGTTACTTATTCTGTCTCGGTCT
CTAAATCTCCGTCGACCGGTGGCGTGTGAGTGGTCTCCGTGCACGCCGTT
GTAGGTCGCGGCGGCCGAATTGCTCATTAACCAATGAATTTTACATGGGG
GGGGGGGCAGCCATGACTTTGACAACAATCACGGCCAAGACGGCAATGGT
AAACAACGACGAAGCCCGCATTGACATAGGAGAGTATAGCCAACCTGCCC
AGGGCCCTCAAACAAGCGAAGCACCACCGCCCCGAAACCGCGCCCTCTTG
CCCGACGGATCTCGTCGGCAGATCAAGCTGGAAGCGACGGACGGACCTCG
GAACATAATCGGCATCATCCTCCCGGAGCGGTCGGTGGAGAGCGTGTGCG
ACGCCCTTCGCGGATACGAGGTGGGTCGGGTTGAGGGTTCGTTCATTGTG
TGTTCCGGTCCGGACCTGGAAGCTGGAGAGGTTTACCGGTTTTGAGGGTT
CGCAGAAGCTCGCGAGCGTTTGTCCATGTAGTCGCGACTTGGTTGTTTTA
GCGGGCTAAGAATATATATGAGCGGAAGGTGTCTGCTAGGGTGTTGCATG
CGTGGCTGTGTGACGGTAAGAAGGGGTAACTACGGCAGTATCTCTCCGCG
CTGTTGTCGTGCGAACGTGCGGTGTTTGGTGTTCGCTCGTGCCCACAAAA
ATCGGCACCTTGCTGCCGCCTCTTTCTCGCCTACTCGTCACCTCGGAACC
CTACTGCTGTTGTATCTCGCCTAGCTCGTCAACTCGAAACCCAACTGTTG
TATCTCGCCTACCTCGTCACCTCGAAACCAAAATGCTGTACATCGCCTAC
CTCGTCACCTCATATCCCTTCTGTATCTCGCCTACTCTTCGCTTCAAAAC
CCTCATGCTGTTTCTCGCCTCCTCATCATCACCTCGAGGCCCTATTGCTG
TGTCTGTGGTGTCTCCTCACGAACAGGCCGAGCTTGAGAAGCAGCGCGAG
GCCGGGGAAAGAAGGGAGAGGGAGGAGAAGGAGGCCCGGGAGGCCGCGGA
GAGGGATCGCCAGGAGGCCAAGCGCGCGCAGCAGGCCATGAAGCTCGAAG
AGCGCAACAAGCAAAAGGGTAAGGCTGGCGGGGGCGGAGCCGGAGCCAGC
GGAGACGTGAAGAGGGAAGAGGAGGCGGGAGAAGAGGAGCAAGACGGAGG
TGCCCCTGTGCTGTCCTCGCTGGACAGGCGTGGGTCGTTCAACGGGGACC
TGGTGCAGCTACTGCAGGGCGGAGGGGGAGCGCGGGCGGCGAAGAGGACG
GCAATGCAGCAGATGCAGAGGGACGCACGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1715:13327..15558-

>mRNA_Ecto-sp13_S_contig1715.5074.1 ID=mRNA_Ecto-sp13_S_contig1715.5074.1|Name=mRNA_Ecto-sp13_S_contig1715.5074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1715:13327..15558- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAAGCTGCTGGCCTGCAGGGAGGAGGGCTGCGGGAGACGGTTCCACAT
GGGGTGCCTCAAGCCTCCCCTCTCGAGGACTCCGAAGGAGGGGGAATGGT
TGTGTCCCATTTGCCGCAAGAGGAAAGCGCACGCGGATCGAGAGGCCAAG
GCCCAGGCCAAGCGAGACCAGAAGAAGCGAGAGCTGGCGGCCAAGTTGGC
CAAGTCGCCCGTCAAGACGATCAAGCTGGAAGCGACGGACGGACCTCGGA
ACATAATCGGCATCATCCTCCCGGAGCGGTCGGTGGAGAGCGTGTGCGAC
GCCCTTCGCGGATACGAGGCCGAGCTTGAGAAGCAGCGCGAGGCCGGGGA
AAGAAGGGAGAGGGAGGAGAAGGAGGCCCGGGAGGCCGCGGAGAGGGATC
GCCAGGAGGCCAAGCGCGCGCAGCAGGCCATGAAGCTCGAAGAGCGCAAC
AAGCAAAAGGGTAAGGCTGGCGGGGGCGGAGCCGGAGCCAGCGGAGACGT
GAAGAGGGAAGAGGAGGCGGGAGAAGAGGAGCAAGACGGAGGTGCCCCTG
TGCTGTCCTCGCTGGACAGGCGTGGGTCGTTCAACGGGGACCTGGTGCAG
CTACTGCAGGGCGGAGGGGGAGCGCGGGCGGCGAAGAGGACGGCAATGCA
GCAGATGCAGAGGGACGCACGA
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