prot_Ecto-sp13_S_contig17061.5023.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17061.5023.1
Unique Nameprot_Ecto-sp13_S_contig17061.5023.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length88
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17061.5023.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.640e-34
Identity = 75/90 (83.33%), Postives = 79/90 (87.78%), Query Frame = 0 
Query:    1 GSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCSEGGAGAGAGAA--VGRVVTARNGGGGVVVGSSTAKLGKDGAEARNNELA 88
            GSLLRALCIRIP+SSVRRSACSVLHRASAWQALGR+PSCCS GG GAGAGAA  VGRVV +RNGGG V   SSTA+LGKDG E RNNELA
Sbjct: 2134 GSLLRALCIRIPESSVRRSACSVLHRASAWQALGREPSCCSGGGVGAGAGAAGAVGRVVASRNGGGEVAAASSTARLGKDGPETRNNELA 2223
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BLAST of mRNA_Ecto-sp13_S_contig17061.5023.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.840e-26
Identity = 64/88 (72.73%), Postives = 64/88 (72.73%), Query Frame = 0 
Query:    1 GSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCSEGGAGAGAGAAVGRVVTARNGGGGVVVGSSTAKLGKDGAEARNNELA 88
            GSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCSE                ARNG       SSTAKLGKDGAE RNNELA
Sbjct: 1139 GSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCSE----------------ARNGXXXXXXXSSTAKLGKDGAEKRNNELA 1210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17061.5023.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU88_ECTSI1.640e-3483.33Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE3.840e-2672.73USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17061contigEcto-sp13_S_contig17061:276..539 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17061.5023.1mRNA_Ecto-sp13_S_contig17061.5023.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17061 276..540 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17061.5023.1 ID=prot_Ecto-sp13_S_contig17061.5023.1|Name=mRNA_Ecto-sp13_S_contig17061.5023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
GSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCSEGGAGAGAG
AAVGRVVTARNGGGGVVVGSSTAKLGKDGAEARNNELA
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