mRNA_Ecto-sp13_S_contig17061.5023.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17061.5023.1
Unique NamemRNA_Ecto-sp13_S_contig17061.5023.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17061.5023.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.640e-34
Identity = 75/90 (83.33%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    1 GSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCSEGGAGAGAGAA--VGRVVTARNGGGGVVVGSSTAKLGKDGAEARNNELA 264
            GSLLRALCIRIP+SSVRRSACSVLHRASAWQALGR+PSCCS GG GAGAGAA  VGRVV +RNGGG V   SSTA+LGKDG E RNNELA
Sbjct: 2134 GSLLRALCIRIPESSVRRSACSVLHRASAWQALGREPSCCSGGGVGAGAGAAGAVGRVVASRNGGGEVAAASSTARLGKDGPETRNNELA 2223
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BLAST of mRNA_Ecto-sp13_S_contig17061.5023.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.840e-26
Identity = 64/88 (72.73%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    1 GSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCSEGGAGAGAGAAVGRVVTARNGGGGVVVGSSTAKLGKDGAEARNNELA 264
            GSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCSE                ARNG       SSTAKLGKDGAE RNNELA
Sbjct: 1139 GSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCSE----------------ARNGXXXXXXXSSTAKLGKDGAEKRNNELA 1210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17061.5023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU88_ECTSI1.640e-3483.33Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE3.840e-2672.73USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17061contigEcto-sp13_S_contig17061:276..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score136.7
Seed ortholog evalue5.1e-30
Seed eggNOG ortholog2880.D8LU88
Model size265
KEGG koko:K11840,ko:K11869
Hectar predicted targeting categorymitochondrion
Exons1
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
Cds size264
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.4862466-CDS-Ecto-sp13_S_contig17061:275..5391681462893.4862466-CDS-Ecto-sp13_S_contig17061:275..539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17061 276..539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17061.5023.1prot_Ecto-sp13_S_contig17061.5023.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17061 276..539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17061.5023.1

>prot_Ecto-sp13_S_contig17061.5023.1 ID=prot_Ecto-sp13_S_contig17061.5023.1|Name=mRNA_Ecto-sp13_S_contig17061.5023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
GSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCSEGGAGAGAG
AAVGRVVTARNGGGGVVVGSSTAKLGKDGAEARNNELA
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mRNA from alignment at Ecto-sp13_S_contig17061:276..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17061.5023.1 ID=mRNA_Ecto-sp13_S_contig17061.5023.1|Name=mRNA_Ecto-sp13_S_contig17061.5023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17061:276..540+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGCCTCCTAAGGGCCCTGTGCATCCGGATACCAGACTCGTCGGTGCG
GCGGTCGGCGTGCTCGGTGCTGCACCGCGCCTCCGCCTGGCAGGCGCTTG
GGCGGGACCCTAGCTGCTGTAGCGAGGGGGGTGCTGGTGCTGGTGCTGGT
GCTGCCGTAGGGAGAGTGGTTACAGCGAGAAATGGCGGCGGTGGAGTAGT
AGTAGGGTCGTCGACGGCCAAACTCGGTAAGGATGGGGCGGAGGCGAGGA
ACAACGAGTTGGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17061:276..540+

>mRNA_Ecto-sp13_S_contig17061.5023.1 ID=mRNA_Ecto-sp13_S_contig17061.5023.1|Name=mRNA_Ecto-sp13_S_contig17061.5023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17061:276..540+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGCCTCCTAAGGGCCCTGTGCATCCGGATACCAGACTCGTCGGTGCG
GCGGTCGGCGTGCTCGGTGCTGCACCGCGCCTCCGCCTGGCAGGCGCTTG
GGCGGGACCCTAGCTGCTGTAGCGAGGGGGGTGCTGGTGCTGGTGCTGGT
GCTGCCGTAGGGAGAGTGGTTACAGCGAGAAATGGCGGCGGTGGAGTAGT
AGTAGGGTCGTCGACGGCCAAACTCGGTAAGGATGGGGCGGAGGCGAGGA
ACAACGAGTTGGCA
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