prot_Ecto-sp13_S_contig16935.4949.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16935.4949.1
Unique Nameprot_Ecto-sp13_S_contig16935.4949.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length93
Homology
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: A0A6H5KAS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS3_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 3.960e-46
Identity = 81/92 (88.04%), Postives = 86/92 (93.48%), Query Frame = 0
Query:    1 MIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTET 92
            MIMVEFQGEGG TGQLFLQQAETVRLISPTQPE TAEK +D+S+SE DTSGS  GWVPLSVT+IEGGEDLLLR+ISRGTHVGRAIDAVVTET
Sbjct:  315 MIMVEFQGEGGRTGQLFLQQAETVRLISPTQPEATAEKSKDDSKSEVDTSGSGRGWVPLSVTNIEGGEDLLLREISRGTHVGRAIDAVVTET 406          
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: D7G089_ECTSI (Similar to 3-Dehydroquinate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G089_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 4.450e-39
Identity = 75/92 (81.52%), Postives = 76/92 (82.61%), Query Frame = 0
Query:    1 MIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTET 92
            MIMVEFQGEGGSTGQLFLQQAETVRLISPTQPE TAEK               GGWVPLSVTDIEGGEDLLLR+ISRGTHVGRAIDAVVTET
Sbjct:  392 MIMVEFQGEGGSTGQLFLQQAETVRLISPTQPETTAEKNSXXXXXXXXXXXXXGGWVPLSVTDIEGGEDLLLREISRGTHVGRAIDAVVTET 483          
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: A0A836CH94_9STRA (3-dehydroquinate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH94_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.060e-11
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 0
Query:    1 MIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTE 91
            ++MV F   GG+ GQLFLQQAETVRL+S                      G  GG   +SVT++  G+ +L+++ +RGTHVGRAI A VTE
Sbjct:  129 LLMVSFDA-GGAEGQLFLQQAETVRLVS----------------------GDGGGGGAVSVTNLGQGDVVLVQRSARGTHVGRAISARVTE 196          
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: A0A7S2V345_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V345_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.090e-7
Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 0
Query:   12 STGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTE 91
            + GQ+FLQQAETVR++SP +     E +            ++  W PLSVT  +  + +++   + GTHVGRAI A VTE
Sbjct:  125 AAGQIFLQQAETVRVLSPVKHNTKNELL------------TQMAWQPLSVTAAKSSDKVIVWGQAHGTHVGRAIIAKVTE 192          
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: A0A0G4EXJ2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EXJ2_VITBC)

HSP 1 Score: 50.4 bits (119), Expect = 3.990e-5
Identity = 35/91 (38.46%), Postives = 46/91 (50.55%), Query Frame = 0
Query:   12 STGQLFLQQAETVRLISPTQPEVTAEKIRDESESEAD-------TSGSRGG---WV-PLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTE 91
            S G +FLQQAETVRL+            RDE               G  G    WV P+S+T ++ G+ +L+R  S GTH+G+ IDA V E
Sbjct:  314 SAGNVFLQQAETVRLLK-----------RDEGTERPSGEHAFLLPGGGEGESVCWVVPVSITSLKAGDSILVRGQSVGTHLGQPIDAKVVE 393          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KAS3_9PHAE3.960e-4688.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G089_ECTSI4.450e-3981.52Similar to 3-Dehydroquinate Synthase n=1 Tax=Ectoc... [more]
A0A836CH94_9STRA5.060e-1143.963-dehydroquinate synthase n=1 Tax=Tribonema minus ... [more]
A0A7S2V345_9STRA1.090e-740.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4EXJ2_VITBC3.990e-538.46Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16935contigEcto-sp13_S_contig16935:2180..3294 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16935.4949.1mRNA_Ecto-sp13_S_contig16935.4949.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16935 1174..3528 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16935.4949.1 ID=prot_Ecto-sp13_S_contig16935.4949.1|Name=mRNA_Ecto-sp13_S_contig16935.4949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
MIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTS
GSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTET*
back to top