mRNA_Ecto-sp13_S_contig16935.4949.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: D7G089_ECTSI (Similar to 3-Dehydroquinate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G089_ECTSI) HSP 1 Score: 258 bits (659), Expect = 7.150e-79 Identity = 131/149 (87.92%), Postives = 133/149 (89.26%), Query Frame = 1
Query: 349 SRPFRINAGPVHSYALLGDGSTKYLSELCAGDQVLVTNWKGESRKVAIGRLKVETRPMIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTET 795
+RPFRINAGPVHSYALLGDGSTKYLSELCAGDQVLVTNWKGESRKVAIGRLKVETRPMIMVEFQGEGGSTGQLFLQQAETVRLISPTQPE TAEK GGWVPLSVTDIEGGEDLLLR+ISRGTHVGRAIDAVVTET
Sbjct: 335 ARPFRINAGPVHSYALLGDGSTKYLSELCAGDQVLVTNWKGESRKVAIGRLKVETRPMIMVEFQGEGGSTGQLFLQQAETVRLISPTQPETTAEKNSXXXXXXXXXXXXXGGWVPLSVTDIEGGEDLLLREISRGTHVGRAIDAVVTET 483
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: A0A6H5KAS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS3_9PHAE) HSP 1 Score: 239 bits (609), Expect = 2.610e-72 Identity = 125/160 (78.12%), Postives = 132/160 (82.50%), Query Frame = 1
Query: 355 PFRINAGPVHSYALLGDGSTKY-------------LSELCAGDQVLVTNWKGESRKVAIGRLKVETRPMIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTET 795
PFRINAGPVHSYALLGDG TK+ + VLVTNWKGESRKVAIGRLKVETRPMIMVEFQGEGG TGQLFLQQAETVRLISPTQPE TAEK +D+S+SE DTSGS GWVPLSVT+IEGGEDLLLR+ISRGTHVGRAIDAVVTET
Sbjct: 247 PFRINAGPVHSYALLGDGRTKHAWACELELDTVAPFWRVVINKLVLVTNWKGESRKVAIGRLKVETRPMIMVEFQGEGGRTGQLFLQQAETVRLISPTQPEATAEKSKDDSKSEVDTSGSGRGWVPLSVTNIEGGEDLLLREISRGTHVGRAIDAVVTET 406
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: A0A0M0K4I1_9EUKA (3-dehydroquinate synthase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K4I1_9EUKA) HSP 1 Score: 134 bits (337), Expect = 4.560e-33 Identity = 74/148 (50.00%), Postives = 96/148 (64.86%), Query Frame = 1
Query: 349 SRPFRINAGPVHSYALLGDGSTKYLSELCAGDQVLVTNWKGESRKVAIGRLKVETRPMIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTE 792
+RPFR+NAGPVHSY LL D +TKYL E+ GDQVL+T+ +G R + +GR KVE RP++++ F+ +G S GQ+FLQQAETVR++ E EA G P SVTD+ G+ LLLR+ + GTHVGRAI A V E
Sbjct: 193 ARPFRVNAGPVHSYVLLADETTKYLDEIRPGDQVLITDAQGSQRSLTVGRCKVEPRPLLLISFESDGAS-GQVFLQQAETVRVMV---------------EGEA-------GLEPRSVTDLRVGDRLLLRRTAMGTHVGRAIRARVEE 317
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: A0A836CH94_9STRA (3-dehydroquinate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH94_9STRA) HSP 1 Score: 130 bits (326), Expect = 9.080e-33 Identity = 76/162 (46.91%), Postives = 97/162 (59.88%), Query Frame = 1
Query: 349 SRPFRINAGPVHSYALLGDGSTKYLSELCAGDQVLVTNWKGES--------------RKVAIGRLKVETRPMIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTE 792
+RPFR+NAGPVH+Y + DGSTKYLSE+ AGDQVLV + S R V +GR K+E RP++MV F GG+ GQLFLQQAETVRL+S G GG +SVT++ G+ +L+++ +RGTHVGRAI A VTE
Sbjct: 58 ARPFRVNAGPVHAYVRMADGSTKYLSEVRAGDQVLVVGPRPASTLTSTAETPQSWPVRAVTVGRCKIEPRPLLMVSFDA-GGAEGQLFLQQAETVRLVS----------------------GDGGGGGAVSVTNLGQGDVVLVQRSARGTHVGRAISARVTE 196
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: A0A7S2V345_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V345_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.140e-32 Identity = 78/182 (42.86%), Postives = 104/182 (57.14%), Query Frame = 1
Query: 307 RTLCNPEAVRFSAS---SRPFRINAGPVHSYALLGDGSTKYLSELCAGDQVLVTNWKGESRKVAIGRLKVETRPMIMVEFQG---EGGSTG--------------QLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTE 792
R LC A F + RPFR+NAGPVHSY + DGSTKYLSE+ AGDQVLV + G++R V +GR KVE RPM+++ + +G S G Q+FLQQAETVR++SP + E + ++ W PLSVT + + +++ + GTHVGRAI A VTE
Sbjct: 23 RLLCLVHAETFPSGFVPPRPFRVNAGPVHSYCKMADGSTKYLSEIGAGDQVLVVSVSGKARGVTVGRCKVERRPMVLLHLRAPEDDGTSAGNSLTTGFLPPQAAGQIFLQQAETVRVLSPVKHNTKNELL------------TQMAWQPLSVTAAKSSDKVIVWGQAHGTHVGRAIIAKVTE 192
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: A0A2E7SIA2_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E7SIA2_9EURY) HSP 1 Score: 126 bits (316), Expect = 8.720e-30 Identity = 69/147 (46.94%), Postives = 92/147 (62.59%), Query Frame = 1
Query: 352 RPFRINAGPVHSYALLGDGSTKYLSELCAGDQVLVTNWKGESRKVAIGRLKVETRPMIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTE 792
RPFR+NAGPVHSY ++ DGSTKYLSEL AGD+VLV + G SR +++GRLK+E RP+++V ++ G GQ+FLQQAETVRL+S + PLSVT IE G ++L + G H+G AI++ V E
Sbjct: 226 RPFRVNAGPVHSYVMMADGSTKYLSELIAGDEVLVVS-PGGSRIISVGRLKIEPRPLLLVRYEDGIGGAGQVFLQQAETVRLVSNIEN-------------------------PLSVTHIEVGMEILGLSAAAGRHIGNAINSDVEE 346
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: A0A7M3ZCB2_9ARCH (3-dehydroquinate synthase II n=2 Tax=Candidatus Poseidoniales TaxID=133814 RepID=A0A7M3ZCB2_9ARCH) HSP 1 Score: 123 bits (309), Expect = 1.940e-29 Identity = 69/147 (46.94%), Postives = 90/147 (61.22%), Query Frame = 1
Query: 352 RPFRINAGPVHSYALLGDGSTKYLSELCAGDQVLVTNWKGESRKVAIGRLKVETRPMIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTE 792
RPFR+NAGPVHSY ++ DGSTKYLSEL AGD+VLV + G SR V++GRLK+E RP+++V + + G +GQ+FLQQAETVRL+S + PLSVT +E G +L G H+G AI + V E
Sbjct: 153 RPFRVNAGPVHSYVMMADGSTKYLSELVAGDEVLVVSPSG-SRVVSVGRLKIEPRPLLLVRYGDDIGRSGQVFLQQAETVRLVSNIEN-------------------------PLSVTHLEAGMKVLGAAGEAGRHIGNAISSDVEE 273
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: A0A2E9BAK0_9ARCH (3-dehydroquinate synthase II n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A2E9BAK0_9ARCH) HSP 1 Score: 124 bits (311), Expect = 4.360e-29 Identity = 70/147 (47.62%), Postives = 90/147 (61.22%), Query Frame = 1
Query: 352 RPFRINAGPVHSYALLGDGSTKYLSELCAGDQVLVTNWKGESRKVAIGRLKVETRPMIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTE 792
RPFRINAGPVHSY ++GDG+TKYLSEL AGD+VLV + SR V +GRLK+E RP+++V ++ E G+ GQ FLQQAETVRL+S EK P+SVT I G ++ Q G H+G+ I + V E
Sbjct: 224 RPFRINAGPVHSYIMMGDGTTKYLSELVAGDEVLVVS-SSSSRVVPVGRLKIEPRPLLIVRYKDEEGNAGQAFLQQAETVRLVS------NIEK-------------------PVSVTHITAGAQVIGFQSKLGRHIGKTISSDVEE 344
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: A0A2D5X3L4_9EURY (3-dehydroquinate synthase II n=3 Tax=Archaea TaxID=2157 RepID=A0A2D5X3L4_9EURY) HSP 1 Score: 123 bits (309), Expect = 8.730e-29 Identity = 69/147 (46.94%), Postives = 90/147 (61.22%), Query Frame = 1
Query: 352 RPFRINAGPVHSYALLGDGSTKYLSELCAGDQVLVTNWKGESRKVAIGRLKVETRPMIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTE 792
RPFR+NAGPVHSY ++ DGSTKYLSEL AGD+VLV + G SR V++GRLK+E RP+++V + + G +GQ+FLQQAETVRL+S + PLSVT +E G +L G H+G AI + V E
Sbjct: 226 RPFRVNAGPVHSYVMMADGSTKYLSELVAGDEVLVVSPSG-SRVVSVGRLKIEPRPLLLVRYGDDIGRSGQVFLQQAETVRLVSNIEN-------------------------PLSVTHLEAGMKVLGAAGEAGRHIGNAISSDVEE 346
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Match: A0A7M4A5Q6_9ARCH (3-dehydroquinate synthase II n=4 Tax=Candidatus Poseidoniales TaxID=133814 RepID=A0A7M4A5Q6_9ARCH) HSP 1 Score: 122 bits (306), Expect = 1.190e-28 Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = 1
Query: 349 SRPFRINAGPVHSYALLGDGSTKYLSELCAGDQVLVTNWKGESRKVAIGRLKVETRPMIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSGSRGGWVPLSVTDIEGGEDLLLRQISRGTHVGRAIDAVVTE 792
SRPFR+NAG +HSY L+ DGSTKYLSEL AGD+V V + G RK IGRLK+E RP +++ F+ G+ GQ+ LQQAETVRL++ SGS +SVT++E G+++++R ++ H+G A+D + E
Sbjct: 189 SRPFRVNAGSIHSYVLMSDGSTKYLSELSAGDEVSVISHSGIFRKSIIGRLKIERRPFLIIRFRSMSGNEGQIMLQQAETVRLVN--------------------ASGSI-----ISVTNLEIGDEIIVRNDNQMRHIGNALDGEMRE 311 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16935.4949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16935.4949.1 >prot_Ecto-sp13_S_contig16935.4949.1 ID=prot_Ecto-sp13_S_contig16935.4949.1|Name=mRNA_Ecto-sp13_S_contig16935.4949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp MIMVEFQGEGGSTGQLFLQQAETVRLISPTQPEVTAEKIRDESESEADTSback to top mRNA from alignment at Ecto-sp13_S_contig16935:1174..3528+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16935.4949.1 ID=mRNA_Ecto-sp13_S_contig16935.4949.1|Name=mRNA_Ecto-sp13_S_contig16935.4949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2355bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16935:1174..3528+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16935:1174..3528+ >mRNA_Ecto-sp13_S_contig16935.4949.1 ID=mRNA_Ecto-sp13_S_contig16935.4949.1|Name=mRNA_Ecto-sp13_S_contig16935.4949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16935:1174..3528+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |