prot_Ecto-sp13_S_contig16902.4936.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16902.4936.1
Unique Nameprot_Ecto-sp13_S_contig16902.4936.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length100
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16902.4936.1 vs. uniprot
Match: D7G513_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G513_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.540e-15
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0 
Query:   58 PPAPCGAGSELTFQVEGETSVEANKVNVAVIIDASGSIFDIEG 100
            P  PCGAGSELTFQ+EGETSVEANKVNVAVIID+SGSIFDI+G
Sbjct:   42 PSCPCGAGSELTFQIEGETSVEANKVNVAVIIDSSGSIFDIDG 84
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16902.4936.1 vs. uniprot
Match: D7FY49_ECTSI (Similar to collagen, partial n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY49_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 7.650e-6
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 0 
Query:   61 PCGAGSELTFQVEGETSVEANKVNVAVIIDASGSI 95
            PC AGS+ +F +EG+T+V AN VNVAVIIDASGS+
Sbjct:   52 PCEAGSQYSFTMEGQTTVTANTVNVAVIIDASGSV 86
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16902.4936.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.300e-6
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 0 
Query:   61 PCGAGSELTFQVEGETSVEANKVNVAVIIDASGSI 95
            PC AGS+ +F +EG+T+V AN VNVAVIIDASGS+
Sbjct:   69 PCEAGSQYSFTMEGQTTVTANTVNVAVIIDASGSV 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16902.4936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G513_ECTSI1.540e-1588.37VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FY49_ECTSI7.650e-668.57Similar to collagen, partial n=2 Tax=Ectocarpus si... [more]
A0A6H5JRK3_9PHAE8.300e-668.57VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16902contigEcto-sp13_S_contig16902:1562..2276 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16902.4936.1mRNA_Ecto-sp13_S_contig16902.4936.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16902 1562..2276 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16902.4936.1 ID=prot_Ecto-sp13_S_contig16902.4936.1|Name=mRNA_Ecto-sp13_S_contig16902.4936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MFFACLFSAPIAIHVVQLPRFRWGDDRTFSSAERWPFSWVPRPVRIRACR
CRMSRSRPPAPCGAGSELTFQVEGETSVEANKVNVAVIIDASGSIFDIEG
back to top