mRNA_Ecto-sp13_S_contig16902.4936.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16902.4936.1
Unique NamemRNA_Ecto-sp13_S_contig16902.4936.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16902.4936.1 vs. uniprot
Match: D7G513_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G513_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.540e-15
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:  172 PPAPCGAGSELTFQVEGETSVEANKVNVAVIIDASGSIFDIEG 300
            P  PCGAGSELTFQ+EGETSVEANKVNVAVIID+SGSIFDI+G
Sbjct:   42 PSCPCGAGSELTFQIEGETSVEANKVNVAVIIDSSGSIFDIDG 84
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BLAST of mRNA_Ecto-sp13_S_contig16902.4936.1 vs. uniprot
Match: D7FY49_ECTSI (Similar to collagen, partial n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY49_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 7.650e-6
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:  181 PCGAGSELTFQVEGETSVEANKVNVAVIIDASGSI 285
            PC AGS+ +F +EG+T+V AN VNVAVIIDASGS+
Sbjct:   52 PCEAGSQYSFTMEGQTTVTANTVNVAVIIDASGSV 86
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BLAST of mRNA_Ecto-sp13_S_contig16902.4936.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.300e-6
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:  181 PCGAGSELTFQVEGETSVEANKVNVAVIIDASGSI 285
            PC AGS+ +F +EG+T+V AN VNVAVIIDASGS+
Sbjct:   69 PCEAGSQYSFTMEGQTTVTANTVNVAVIIDASGSV 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16902.4936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G513_ECTSI1.540e-1588.37VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FY49_ECTSI7.650e-668.57Similar to collagen, partial n=2 Tax=Ectocarpus si... [more]
A0A6H5JRK3_9PHAE8.300e-668.57VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16902contigEcto-sp13_S_contig16902:1562..2276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462885.9345458-CDS-Ecto-sp13_S_contig16902:1561..16151681462885.9345458-CDS-Ecto-sp13_S_contig16902:1561..1615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16902 1562..1615 -
1681462885.9450684-CDS-Ecto-sp13_S_contig16902:2030..22761681462885.9450684-CDS-Ecto-sp13_S_contig16902:2030..2276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16902 2031..2276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16902.4936.1prot_Ecto-sp13_S_contig16902.4936.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16902 1562..2276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16902.4936.1

>prot_Ecto-sp13_S_contig16902.4936.1 ID=prot_Ecto-sp13_S_contig16902.4936.1|Name=mRNA_Ecto-sp13_S_contig16902.4936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MFFACLFSAPIAIHVVQLPRFRWGDDRTFSSAERWPFSWVPRPVRIRACR
CRMSRSRPPAPCGAGSELTFQVEGETSVEANKVNVAVIIDASGSIFDIEG
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mRNA from alignment at Ecto-sp13_S_contig16902:1562..2276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16902.4936.1 ID=mRNA_Ecto-sp13_S_contig16902.4936.1|Name=mRNA_Ecto-sp13_S_contig16902.4936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=715bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16902:1562..2276- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCTTTGCTTGCCTTTTTTCCGCTCCCATCGCCATTCATGTTGTTCA
ACTCCCCCGCTTCAGATGGGGCGACGATCGAACCTTCAGCTCGGCGGAGC
GCTGGCCCTTTTCCTGGGTACCGCGTCCGGTCAGGATTCGTGCGTGCAGG
TGTCGAATGTCTCGTTCGCGCCCTCCTGCCCCCTGCGGCGCAGGTAGCGA
GCTCACCTTTCAGGTCGAGGGCGAAACGTCCGTAGAGGCAAACAAGGTGA
TTTTATCTTCTCGGGCGGAGGGAACGCCGTTCCACACCGAGCTCGAACGC
TGCCGGCCTGGCCAGATTCTAGGGTTCCCTCCCAGGGAGGCAGGGGGTTG
CCGTAGTTCGAGCTTGTTTTGCTCGGCGATGAGGGGAGATCGGGTGTGAC
TTACAGAAAAATATCAACATTGAACGCGTCATACATCAACCATTAATTAA
GGACCAACAACGATGTAGCTGAGGTGTGTGAAGTGGAAGGCTAAGCATGC
AATTTCATGTGTACTTGCTCGTAAAAAACAATCCACCGATACGGCATCCT
CGGTGGCTAAATCCACGTACCACCGTCGTCGTCCTTCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGGTTGCTGCTC
GACACCACGAGGTCAACGTGGCCGTCATCATCGACGCCTCGGGTAGCATA
TTTGACATAGAAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16902:1562..2276-

>mRNA_Ecto-sp13_S_contig16902.4936.1 ID=mRNA_Ecto-sp13_S_contig16902.4936.1|Name=mRNA_Ecto-sp13_S_contig16902.4936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16902:1562..2276- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCTTTGCTTGCCTTTTTTCCGCTCCCATCGCCATTCATGTTGTTCA
ACTCCCCCGCTTCAGATGGGGCGACGATCGAACCTTCAGCTCGGCGGAGC
GCTGGCCCTTTTCCTGGGTACCGCGTCCGGTCAGGATTCGTGCGTGCAGG
TGTCGAATGTCTCGTTCGCGCCCTCCTGCCCCCTGCGGCGCAGGTAGCGA
GCTCACCTTTCAGGTCGAGGGCGAAACGTCCGTAGAGGCAAACAAGGTCA
ACGTGGCCGTCATCATCGACGCCTCGGGTAGCATATTTGACATAGAAGGC
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