prot_Ecto-sp13_S_contig1680.4873.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1680.4873.1
Unique Nameprot_Ecto-sp13_S_contig1680.4873.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length55
Homology
BLAST of mRNA_Ecto-sp13_S_contig1680.4873.1 vs. uniprot
Match: D8LTM3_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM3_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.310e-24
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 0
Query:    3 LLLRLSVADNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKMDDV 53
            +L+ + V DNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKMD++
Sbjct:  191 VLVGVHVLDNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKMDEM 241          
BLAST of mRNA_Ecto-sp13_S_contig1680.4873.1 vs. uniprot
Match: E3LLZ3_CAERE (RING-type domain-containing protein n=4 Tax=Caenorhabditis TaxID=6237 RepID=E3LLZ3_CAERE)

HSP 1 Score: 51.6 bits (122), Expect = 2.010e-6
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 0
Query:    9 VADNCGHTFCGACMERWIDNAPQGECPVCRTPVD 42
            V D CGHTFC AC+E W++N  +  CP+CRTP++
Sbjct:   23 VIDECGHTFCYACLENWLNN--EDTCPMCRTPIN 54          
BLAST of mRNA_Ecto-sp13_S_contig1680.4873.1 vs. uniprot
Match: A0A4D9DAD4_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAD4_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.380e-5
Identity = 19/40 (47.50%), Postives = 26/40 (65.00%), Query Frame = 0
Query:   14 GHTFCGACMERWIDNAPQG--ECPVCRTPVDKLVPVRKMD 51
            GHTFCG C+ERW++    G   CP C+ PV   +P+R+ D
Sbjct:  430 GHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYD 469          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1680.4873.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTM3_ECTSI1.310e-2484.31RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
E3LLZ3_CAERE2.010e-655.88RING-type domain-containing protein n=4 Tax=Caenor... [more]
A0A4D9DAD4_9STRA2.380e-547.50RING-type domain-containing protein n=2 Tax=Monodo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 10..43
e-value: 2.9E-8
score: 33.4
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..10
score: 0.483
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 12..48
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 8..47
e-value: 8.1E-12
score: 46.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 13..22
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 1..38
score: 10.232

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1680contigEcto-sp13_S_contig1680:15803..15967 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1680.4873.1mRNA_Ecto-sp13_S_contig1680.4873.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1680 15803..15967 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1680.4873.1 ID=prot_Ecto-sp13_S_contig1680.4873.1|Name=mRNA_Ecto-sp13_S_contig1680.4873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
LCLLLRLSVADNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKM
DDVRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001841Znf_RING