mRNA_Ecto-sp13_S_contig1680.4873.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1680.4873.1
Unique NamemRNA_Ecto-sp13_S_contig1680.4873.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1680.4873.1 vs. uniprot
Match: D8LTM3_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM3_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.310e-24
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    7 LLLRLSVADNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKMDDV 159
            +L+ + V DNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKMD++
Sbjct:  191 VLVGVHVLDNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKMDEM 241
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BLAST of mRNA_Ecto-sp13_S_contig1680.4873.1 vs. uniprot
Match: E3LLZ3_CAERE (RING-type domain-containing protein n=4 Tax=Caenorhabditis TaxID=6237 RepID=E3LLZ3_CAERE)

HSP 1 Score: 51.6 bits (122), Expect = 2.010e-6
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   25 VADNCGHTFCGACMERWIDNAPQGECPVCRTPVD 126
            V D CGHTFC AC+E W++N  +  CP+CRTP++
Sbjct:   23 VIDECGHTFCYACLENWLNN--EDTCPMCRTPIN 54
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BLAST of mRNA_Ecto-sp13_S_contig1680.4873.1 vs. uniprot
Match: A0A4D9DAD4_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAD4_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.380e-5
Identity = 19/40 (47.50%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:   40 GHTFCGACMERWIDNAPQG--ECPVCRTPVDKLVPVRKMD 153
            GHTFCG C+ERW++    G   CP C+ PV   +P+R+ D
Sbjct:  430 GHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYD 469
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1680.4873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTM3_ECTSI1.310e-2484.31RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
E3LLZ3_CAERE2.010e-655.88RING-type domain-containing protein n=4 Tax=Caenor... [more]
A0A4D9DAD4_9STRA2.380e-547.50RING-type domain-containing protein n=2 Tax=Monodo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1680contigEcto-sp13_S_contig1680:15803..15967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-28_003550.1
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.3268337-CDS-Ecto-sp13_S_contig1680:15802..159671681462881.3268337-CDS-Ecto-sp13_S_contig1680:15802..15967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1680 15803..15967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1680.4873.1prot_Ecto-sp13_S_contig1680.4873.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1680 15803..15967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1680.4873.1

>prot_Ecto-sp13_S_contig1680.4873.1 ID=prot_Ecto-sp13_S_contig1680.4873.1|Name=mRNA_Ecto-sp13_S_contig1680.4873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
LCLLLRLSVADNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKM
DDVRR
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mRNA from alignment at Ecto-sp13_S_contig1680:15803..15967-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1680.4873.1 ID=mRNA_Ecto-sp13_S_contig1680.4873.1|Name=mRNA_Ecto-sp13_S_contig1680.4873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1680:15803..15967- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTGTCTTTTGCTGCGATTGTCTGTCGCAGATAACTGTGGCCATACCTT
CTGTGGCGCCTGCATGGAGCGCTGGATCGACAACGCCCCTCAGGGAGAAT
GCCCTGTGTGCAGAACACCCGTCGACAAGCTCGTACCCGTCAGGAAGATG
GACGATGTGCGTAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1680:15803..15967-

>mRNA_Ecto-sp13_S_contig1680.4873.1 ID=mRNA_Ecto-sp13_S_contig1680.4873.1|Name=mRNA_Ecto-sp13_S_contig1680.4873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1680:15803..15967- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTGTCTTTTGCTGCGATTGTCTGTCGCAGATAACTGTGGCCATACCTT
CTGTGGCGCCTGCATGGAGCGCTGGATCGACAACGCCCCTCAGGGAGAAT
GCCCTGTGTGCAGAACACCCGTCGACAAGCTCGTACCCGTCAGGAAGATG
GACGATGTGCGTAGG
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