prot_Ecto-sp13_S_contig1674.4832.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1674.4832.1
Unique Nameprot_Ecto-sp13_S_contig1674.4832.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length211
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1674.4832.1 vs. uniprot
Match: D8LIV9_ECTSI (Novel protein containing a T-complex protein 11 domain (Zgc:73347) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV9_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 6.560e-52
Identity = 144/158 (91.14%), Postives = 145/158 (91.77%), Query Frame = 0 
Query:   54 GGDYRLPDGRLGRLLGNEQLAHEILVNPDFQIPAIEEDDPRXXXXXXXXXXXXXELARRFKDVMRRIFWDRFTQSLLPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGAAEAVVNVTGLPPLRAGSKVHARYGSERGSYYAATVVAVGSSHDA 211
            GGDYRLPDGRLGRLLGNEQLAHEILVN DFQIPAIEEDDPR  XXXXXXXX   ELARRFKDVMRRIFWDRFTQSLLPPP XXXXXXXXXXXXXXXXXXXXXXXXXXX    GA EAVV+VTGLPPLRAGSKVHARYGSERGSYYAATVVAVGSS DA
Sbjct:  288 GGDYRLPDGRLGRLLGNEQLAHEILVNADFQIPAIEEDDPRNSXXXXXXXXEE-ELARRFKDVMRRIFWDRFTQSLLPPPNXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEDGA-EAVVHVTGLPPLRAGSKVHARYGSERGSYYAATVVAVGSSSDA 443
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1674.4832.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIV9_ECTSI6.560e-5291.14Novel protein containing a T-complex protein 11 do... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1674contigEcto-sp13_S_contig1674:13033..13923 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1674.4832.1mRNA_Ecto-sp13_S_contig1674.4832.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1674 13031..13923 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1674.4832.1 ID=prot_Ecto-sp13_S_contig1674.4832.1|Name=mRNA_Ecto-sp13_S_contig1674.4832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp
AATTATPLPKNETNTTAPNTRSSATVGDVTGGGSASKAAGPVPAAAVPAS
AGTGGDYRLPDGRLGRLLGNEQLAHEILVNPDFQIPAIEEDDPRNSTASS
SSSSPEEELARRFKDVMRRIFWDRFTQSLLPPPDPTAAAAATAASSADAP
AGAASNTATAAAGVGGAAEAVVNVTGLPPLRAGSKVHARYGSERGSYYAA
TVVAVGSSHDA
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