mRNA_Ecto-sp13_S_contig1674.4832.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1674.4832.1
Unique NamemRNA_Ecto-sp13_S_contig1674.4832.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1674.4832.1 vs. uniprot
Match: D8LIV9_ECTSI (Novel protein containing a T-complex protein 11 domain (Zgc:73347) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV9_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 6.560e-52
Identity = 144/158 (91.14%), Postives = 145/158 (91.77%), Query Frame = 1 
Query:  160 GGDYRLPDGRLGRLLGNEQLAHEILVNPDFQIPAIEEDDPRXXXXXXXXXXXXXELARRFKDVMRRIFWDRFTQSLLPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGAAEAVVNVTGLPPLRAGSKVHARYGSERGSYYAATVVAVGSSHDA 633
            GGDYRLPDGRLGRLLGNEQLAHEILVN DFQIPAIEEDDPR  XXXXXXXX   ELARRFKDVMRRIFWDRFTQSLLPPP XXXXXXXXXXXXXXXXXXXXXXXXXXX    GA EAVV+VTGLPPLRAGSKVHARYGSERGSYYAATVVAVGSS DA
Sbjct:  288 GGDYRLPDGRLGRLLGNEQLAHEILVNADFQIPAIEEDDPRNSXXXXXXXXEE-ELARRFKDVMRRIFWDRFTQSLLPPPNXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEDGA-EAVVHVTGLPPLRAGSKVHARYGSERGSYYAATVVAVGSSSDA 443
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1674.4832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIV9_ECTSI6.560e-5291.14Novel protein containing a T-complex protein 11 do... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1674contigEcto-sp13_S_contig1674:13031..13923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score191.4
Seed ortholog evalue4.2e-46
Seed eggNOG ortholog2880.D8LIV9
Model size635
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of sperm capacitation
EggNOG OGsKOG1981@1,KOG1981@2759
Cds size633
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462878.42279-CDS-Ecto-sp13_S_contig1674:13032..134131681462878.42279-CDS-Ecto-sp13_S_contig1674:13032..13413Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 13033..13413 -
1681462878.4361417-CDS-Ecto-sp13_S_contig1674:13671..139231681462878.4361417-CDS-Ecto-sp13_S_contig1674:13671..13923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 13672..13923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1674.4832.1prot_Ecto-sp13_S_contig1674.4832.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1674 13033..13923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1674.4832.1

>prot_Ecto-sp13_S_contig1674.4832.1 ID=prot_Ecto-sp13_S_contig1674.4832.1|Name=mRNA_Ecto-sp13_S_contig1674.4832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp
AATTATPLPKNETNTTAPNTRSSATVGDVTGGGSASKAAGPVPAAAVPAS
AGTGGDYRLPDGRLGRLLGNEQLAHEILVNPDFQIPAIEEDDPRNSTASS
SSSSPEEELARRFKDVMRRIFWDRFTQSLLPPPDPTAAAAATAASSADAP
AGAASNTATAAAGVGGAAEAVVNVTGLPPLRAGSKVHARYGSERGSYYAA
TVVAVGSSHDA
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mRNA from alignment at Ecto-sp13_S_contig1674:13031..13923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1674.4832.1 ID=mRNA_Ecto-sp13_S_contig1674.4832.1|Name=mRNA_Ecto-sp13_S_contig1674.4832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=893bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1674:13031..13923- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCTACCACCGCTACTCCCCTCCCCAAGAACGAGACAAACACTACCGC
TCCCAACACCAGGAGTTCTGCCACCGTGGGTGATGTGACGGGGGGAGGGT
CCGCTTCGAAGGCAGCAGGACCGGTACCAGCAGCAGCAGTTCCCGCGAGC
GCGGGCACGGGTGGGGACTACCGACTGCCCGATGGCCGCTTGGGCCGCTT
GCTGGGAAACGAGCAGTTGGCGCACGAGATACTCGTCAATCCAGACTTCC
AGGTGCGTGAGGGCGGGGGGTAAGCAAGTGGGCGGGTGGGCGGGCGGGTG
GGCGGGGGTACTCGTTTTTGTGTTACATAAAGATCTGTTTGTGCGCTACT
CCTGTATTTTTTCTACCCTACTCATCATTTTTTCTATCAGTTTGCCAGGG
CGATGCTAATTGCCAACAACAAAGAGGGCCCCCGACAGTACTGCCCTGTA
CTTTAGCAAACATCAAAGAATTGTTTTTTTTTCTCTTTTGTCCCTCTCTC
TTGAGAACAGATCCCGGCCATCGAGGAGGACGACCCCCGCAACAGCACCG
CCTCCTCCTCCTCCTCCTCGCCCGAGGAAGAACTGGCACGGCGATTCAAG
GACGTCATGCGGCGGATATTCTGGGACCGTTTCACGCAGTCGCTCCTGCC
CCCGCCCGACCCAACCGCCGCCGCCGCCGCCACCGCCGCCTCGTCTGCGG
ATGCCCCTGCCGGCGCCGCCTCGAACACCGCTACCGCCGCCGCCGGGGTG
GGGGGGGCAGCTGAAGCTGTGGTTAATGTCACGGGGCTCCCGCCCCTGCG
GGCCGGTTCCAAGGTGCACGCGAGGTACGGCTCGGAGAGAGGGTCGTACT
ACGCCGCCACGGTGGTCGCGGTAGGCTCTTCTCACGATGCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1674:13031..13923-

>mRNA_Ecto-sp13_S_contig1674.4832.1 ID=mRNA_Ecto-sp13_S_contig1674.4832.1|Name=mRNA_Ecto-sp13_S_contig1674.4832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1674:13031..13923- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCTACCACCGCTACTCCCCTCCCCAAGAACGAGACAAACACTACCGC
TCCCAACACCAGGAGTTCTGCCACCGTGGGTGATGTGACGGGGGGAGGGT
CCGCTTCGAAGGCAGCAGGACCGGTACCAGCAGCAGCAGTTCCCGCGAGC
GCGGGCACGGGTGGGGACTACCGACTGCCCGATGGCCGCTTGGGCCGCTT
GCTGGGAAACGAGCAGTTGGCGCACGAGATACTCGTCAATCCAGACTTCC
AGATCCCGGCCATCGAGGAGGACGACCCCCGCAACAGCACCGCCTCCTCC
TCCTCCTCCTCGCCCGAGGAAGAACTGGCACGGCGATTCAAGGACGTCAT
GCGGCGGATATTCTGGGACCGTTTCACGCAGTCGCTCCTGCCCCCGCCCG
ACCCAACCGCCGCCGCCGCCGCCACCGCCGCCTCGTCTGCGGATGCCCCT
GCCGGCGCCGCCTCGAACACCGCTACCGCCGCCGCCGGGGTGGGGGGGGC
AGCTGAAGCTGTGGTTAATGTCACGGGGCTCCCGCCCCTGCGGGCCGGTT
CCAAGGTGCACGCGAGGTACGGCTCGGAGAGAGGGTCGTACTACGCCGCC
ACGGTGGTCGCGGTAGGCTCTTCTCACGATGCA
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