prot_Ecto-sp13_S_contig167.4802.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig167.4802.1
Unique Nameprot_Ecto-sp13_S_contig167.4802.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length553
Homology
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BLAST of mRNA_Ecto-sp13_S_contig167.4802.1 vs. uniprot
Match: A0A6H5JJD6_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJD6_9PHAE)

HSP 1 Score: 790 bits (2040), Expect = 8.130e-281
Identity = 440/511 (86.11%), Postives = 460/511 (90.02%), Query Frame = 0 
Query:   42 RATFSAAVKPECPVCQVEVKEAVLDPCRHLAACASCAKSLQSCPLCSCPVRGYRPLESRQVFERVSALEDESAGMRAQLKRFSRRVRDLVAENADLKLDVRRARAEILVVTAERRGLEERFLLRTPSPQLTPPVVESGSIAVGSSVASFEGGGTEKPRGRFTLTSENSTGTSGARDDGIHRMQRPGVVFSGGGFSAPSLDEPELAVLDCPRPADGSYLSGRPAGGEGKGQTGGSSKSSCSESIAEGANSSGDGDPSKTTTAVESGARVDDAERGDGQDAEGCLFPDRTVGDGDAAPTPGEATCGIDDHKCERQEELHAYTLGTLAQLKDAAGGGGESAAALATVQAARGSAAGHPPDLESACLDRPTADSHLDXXXXXXXXXXXXXXXXXXXXXXXDSDRVAFSRSVRPTRACSVSVKIVGGACIDSSDTRAESTHPASRPGALFLAGGDGEEENDSRRCPMDVLNSGNQVVERDTNSASDDGDWSISTRICGDKSGMWPSSSFILAQSQR 552
            R    +AVKPECPVCQVEVKEAVLDPCRHLA CASCA SLQSCPLCSCPVRGYR LESRQV+ER+SALEDESAGMRAQ  RFSRRVRDLVAENADLKLDV+R RAE+ VVTAERRGLEERFLLRTPSP+ TPPVVESGSIA GSSVASFEGGG EKPRGRFTLTSENSTGTSGA DDGIHRMQRPGVVFSGGGFSAPSLDEPELAVLD PRP+DGSYLSGRPA GEGKGQ G SSKSSCSE IAEGANSS DGDPSKTTT VE+G RVD +E GDGQDA  C FPDRTVGDGDAAPTP +ATCG+DD KCERQEELHA TLGTLA+LKD AGGG ESA ALATVQAARGSAA  PP LE ACLD PTADSHLDXXXXXXXXXXXXXXXXXXXXXX DSDRVAFS+SVRPTRACSVSVKIVGGAC+D S + AE+THPA+ PGALFLAG DGEE+ +S R PMDV NSGNQVVERDTNSASDDGDWSIST ICGD SG+WPSSSFILAQSQR
Sbjct:  216 RRRIKSAVKPECPVCQVEVKEAVLDPCRHLATCASCANSLQSCPLCSCPVRGYRLLESRQVYERISALEDESAGMRAQSLRFSRRVRDLVAENADLKLDVQRTRAELSVVTAERRGLEERFLLRTPSPEPTPPVVESGSIAAGSSVASFEGGGAEKPRGRFTLTSENSTGTSGACDDGIHRMQRPGVVFSGGGFSAPSLDEPELAVLDRPRPSDGSYLSGRPASGEGKGQAGSSSKSSCSELIAEGANSSSDGDPSKTTTTVETGVRVDASEGGDGQDAGRCFFPDRTVGDGDAAPTPVKATCGMDDQKCERQEELHACTLGTLAELKDGAGGGSESATALATVQAARGSAADDPPGLEDACLDEPTADSHLDXXXXXXXXXXXXXXXXXXXXXXEDSDRVAFSQSVRPTRACSVSVKIVGGACMDCSGSTAETTHPANLPGALFLAGRDGEEDTNSTRSPMDVSNSGNQVVERDTNSASDDGDWSISTSICGDTSGLWPSSSFILAQSQR 726
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig167.4802.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJD6_9PHAE8.130e-28186.11RING-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 106..161
NoneNo IPR availableCOILSCoilCoilcoord: 9..36
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 51..92
e-value: 4.4E-9
score: 36.1
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 52..94
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 53..87
e-value: 0.0091
score: 25.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 53..88
score: 10.557
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 31..95
e-value: 3.7E-11
score: 44.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig167contigEcto-sp13_S_contig167:31707..34693 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig167.4802.1mRNA_Ecto-sp13_S_contig167.4802.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig167 31707..34693 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig167.4802.1 ID=prot_Ecto-sp13_S_contig167.4802.1|Name=mRNA_Ecto-sp13_S_contig167.4802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=553bp
ASSSLECAVDSLRSKVSHLEDQLERAERERLEVMAYSSDESRATFSAAVK
PECPVCQVEVKEAVLDPCRHLAACASCAKSLQSCPLCSCPVRGYRPLESR
QVFERVSALEDESAGMRAQLKRFSRRVRDLVAENADLKLDVRRARAEILV
VTAERRGLEERFLLRTPSPQLTPPVVESGSIAVGSSVASFEGGGTEKPRG
RFTLTSENSTGTSGARDDGIHRMQRPGVVFSGGGFSAPSLDEPELAVLDC
PRPADGSYLSGRPAGGEGKGQTGGSSKSSCSESIAEGANSSGDGDPSKTT
TAVESGARVDDAERGDGQDAEGCLFPDRTVGDGDAAPTPGEATCGIDDHK
CERQEELHAYTLGTLAQLKDAAGGGGESAAALATVQAARGSAAGHPPDLE
SACLDRPTADSHLDIETFRVDESTADNHLDHETVRLEDSDRVAFSRSVRP
TRACSVSVKIVGGACIDSSDTRAESTHPASRPGALFLAGGDGEEENDSRR
CPMDVLNSGNQVVERDTNSASDDGDWSISTRICGDKSGMWPSSSFILAQS
QR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD