mRNA_Ecto-sp13_S_contig167.4802.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig167.4802.1
Unique NamemRNA_Ecto-sp13_S_contig167.4802.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig167.4802.1 vs. uniprot
Match: A0A6H5JJD6_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJD6_9PHAE)

HSP 1 Score: 790 bits (2040), Expect = 8.130e-281
Identity = 440/511 (86.11%), Postives = 460/511 (90.02%), Query Frame = 1 
Query:  124 RATFSAAVKPECPVCQVEVKEAVLDPCRHLAACASCAKSLQSCPLCSCPVRGYRPLESRQVFERVSALEDESAGMRAQLKRFSRRVRDLVAENADLKLDVRRARAEILVVTAERRGLEERFLLRTPSPQLTPPVVESGSIAVGSSVASFEGGGTEKPRGRFTLTSENSTGTSGARDDGIHRMQRPGVVFSGGGFSAPSLDEPELAVLDCPRPADGSYLSGRPAGGEGKGQTGGSSKSSCSESIAEGANSSGDGDPSKTTTAVESGARVDDAERGDGQDAEGCLFPDRTVGDGDAAPTPGEATCGIDDHKCERQEELHAYTLGTLAQLKDAAGGGGESAAALATVQAARGSAAGHPPDLESACLDRPTADSHLDXXXXXXXXXXXXXXXXXXXXXXXDSDRVAFSRSVRPTRACSVSVKIVGGACIDSSDTRAESTHPASRPGALFLAGGDGEEENDSRRCPMDVLNSGNQVVERDTNSASDDGDWSISTRICGDKSGMWPSSSFILAQSQR 1656
            R    +AVKPECPVCQVEVKEAVLDPCRHLA CASCA SLQSCPLCSCPVRGYR LESRQV+ER+SALEDESAGMRAQ  RFSRRVRDLVAENADLKLDV+R RAE+ VVTAERRGLEERFLLRTPSP+ TPPVVESGSIA GSSVASFEGGG EKPRGRFTLTSENSTGTSGA DDGIHRMQRPGVVFSGGGFSAPSLDEPELAVLD PRP+DGSYLSGRPA GEGKGQ G SSKSSCSE IAEGANSS DGDPSKTTT VE+G RVD +E GDGQDA  C FPDRTVGDGDAAPTP +ATCG+DD KCERQEELHA TLGTLA+LKD AGGG ESA ALATVQAARGSAA  PP LE ACLD PTADSHLDXXXXXXXXXXXXXXXXXXXXXX DSDRVAFS+SVRPTRACSVSVKIVGGAC+D S + AE+THPA+ PGALFLAG DGEE+ +S R PMDV NSGNQVVERDTNSASDDGDWSIST ICGD SG+WPSSSFILAQSQR
Sbjct:  216 RRRIKSAVKPECPVCQVEVKEAVLDPCRHLATCASCANSLQSCPLCSCPVRGYRLLESRQVYERISALEDESAGMRAQSLRFSRRVRDLVAENADLKLDVQRTRAELSVVTAERRGLEERFLLRTPSPEPTPPVVESGSIAAGSSVASFEGGGAEKPRGRFTLTSENSTGTSGACDDGIHRMQRPGVVFSGGGFSAPSLDEPELAVLDRPRPSDGSYLSGRPASGEGKGQAGSSSKSSCSELIAEGANSSSDGDPSKTTTTVETGVRVDASEGGDGQDAGRCFFPDRTVGDGDAAPTPVKATCGMDDQKCERQEELHACTLGTLAELKDGAGGGSESATALATVQAARGSAADDPPGLEDACLDEPTADSHLDXXXXXXXXXXXXXXXXXXXXXXEDSDRVAFSQSVRPTRACSVSVKIVGGACMDCSGSTAETTHPANLPGALFLAGRDGEEDTNSTRSPMDVSNSGNQVVERDTNSASDDGDWSISTSICGDTSGLWPSSSFILAQSQR 726
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig167.4802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJD6_9PHAE8.130e-28186.11RING-type domain-containing protein n=2 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig167contigEcto-sp13_S_contig167:31707..34693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score839.0
Seed ortholog evalue1.3e-240
Seed eggNOG ortholog2880.D7FLD3
Preferred nameMYO16
Model size1659
KEGG koko:K08803,ko:K17481
KEGG Pathwayko04140,ko05200,ko05219,map04140,map05200,map05219
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-12_007730.1
EC2.7.11.1
Cds size1659
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462876.040636-CDS-Ecto-sp13_S_contig167:31706..329871681462876.040636-CDS-Ecto-sp13_S_contig167:31706..32987Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig167 31707..32987 -
1681462876.0510037-CDS-Ecto-sp13_S_contig167:33387..335171681462876.0510037-CDS-Ecto-sp13_S_contig167:33387..33517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig167 33388..33517 -
1681462876.059111-CDS-Ecto-sp13_S_contig167:34047..342501681462876.059111-CDS-Ecto-sp13_S_contig167:34047..34250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig167 34048..34250 -
1681462876.0671463-CDS-Ecto-sp13_S_contig167:34648..346931681462876.0671463-CDS-Ecto-sp13_S_contig167:34648..34693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig167 34649..34693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig167.4802.1prot_Ecto-sp13_S_contig167.4802.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig167 31707..34693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig167.4802.1

>prot_Ecto-sp13_S_contig167.4802.1 ID=prot_Ecto-sp13_S_contig167.4802.1|Name=mRNA_Ecto-sp13_S_contig167.4802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=553bp
ASSSLECAVDSLRSKVSHLEDQLERAERERLEVMAYSSDESRATFSAAVK
PECPVCQVEVKEAVLDPCRHLAACASCAKSLQSCPLCSCPVRGYRPLESR
QVFERVSALEDESAGMRAQLKRFSRRVRDLVAENADLKLDVRRARAEILV
VTAERRGLEERFLLRTPSPQLTPPVVESGSIAVGSSVASFEGGGTEKPRG
RFTLTSENSTGTSGARDDGIHRMQRPGVVFSGGGFSAPSLDEPELAVLDC
PRPADGSYLSGRPAGGEGKGQTGGSSKSSCSESIAEGANSSGDGDPSKTT
TAVESGARVDDAERGDGQDAEGCLFPDRTVGDGDAAPTPGEATCGIDDHK
CERQEELHAYTLGTLAQLKDAAGGGGESAAALATVQAARGSAAGHPPDLE
SACLDRPTADSHLDIETFRVDESTADNHLDHETVRLEDSDRVAFSRSVRP
TRACSVSVKIVGGACIDSSDTRAESTHPASRPGALFLAGGDGEEENDSRR
CPMDVLNSGNQVVERDTNSASDDGDWSISTRICGDKSGMWPSSSFILAQS
QR*
back to top

mRNA from alignment at Ecto-sp13_S_contig167:31707..34693-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig167.4802.1 ID=mRNA_Ecto-sp13_S_contig167.4802.1|Name=mRNA_Ecto-sp13_S_contig167.4802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig167:31707..34693- (Ectocarpus species13 EcNAP12_S_4_19m)
GCATCGTCCTCCCTGGAGTGTGCGGTGGATTCTCTGCGATCAAAGGTACC
AGCGCAGAGGCGCGTGGTAGCGTCTTGTTCGCCCCGTCTCGAGCACGACC
TCAAGGAAACATTGAAACACATCCCGCTTCCTTGGTAGACGGTGGGGGAA
AGCCCGAATTGAGAGCACAGGGTTGCCAGCAGTCCGTGCCGAATTTGCCA
GTCGGTTCTGCAGCAATACCAGTATATGTCGCTAAAAACAGATATGAAAA
GCGCCAAACTCGCATTTTCGATCCTTTGGACCACCTCACCAGCGCCGTTG
TTCACTCCCTTTCCACCGGCTCGTACATAGCATCAAAGTCTCACGATTGG
CGTGCAACCTGAAGAATGCGAGGCTCCGCGAGTCTTTTCGATTTACGCAC
CCCTTGTTCTGCGGCCCTCATCTTCTCCTCGAACCTATCATAGGTGTCCC
ATCTCGAGGACCAGCTTGAAAGGGCCGAAAGGGAACGCTTGGAGGTGATG
GCGTACTCCTCTGATGAGAGTCGCGCCACATTTTCTGCAGCCGTTAAGCC
GGAATGCCCTGTCTGTCAAGTGGAGGTTAAGGAGGCCGTACTTGACCCTT
GCCGACACCTTGCGGCTTGCGCTTCATGTGCCAAGTCGCTCCAGAGGTAA
TCTCTACGGTACATGTAGCTATGTTTCTTTGCTGCTGATTCAGAAATGTG
CGCAAATCTTAGGTGTGAGCGCACATACACTGCAGCACAGGTTTCGACTT
CGTACTTTTGGGTGTTGACTACGTAACGAAGCATCATCAATGTAGTGGGT
AGTTTATCGAGGACGACTCTACAGCTCAAGCGCCAAAACGTTTTTTCCGA
TGTGGGTGAGTGATACTCCATGACCTCGATTATCAGGAAATTACGACATG
GACTGTATCTGTGGGGAAACACTTTTCAATGATGCCCATGACGTTGAATG
CTACTGCTATCGCCAAGCACCACAGCTGCGGGCCCTCTCCACAGAGACCA
TTCCCTCGGGAGTGCACAATCTTACGTTGAGATTGAAGTTGCTGCGTTTT
TTTTAACCGACATCCACGTTGGGAGTGGGCTTTCTCTTTCAGGAACCTGC
ATGTCCATAAACCTTGCTTCGGTCGCCTGTCTTCCCGCCTACCAGTGACT
CTCCAAACGTGTATGCTCGTTGGCAGTTGTCCTCTTTGCAGCTGCCCCGT
GCGAGGGTACCGGCCCCTGGAGAGCAGACAAGTATTCGAGCGCGTTTCAG
CTTTGGAAGACGAAAGCGCCGGGATGAGGGCGCAGTTGAAAAGGTTCAGC
CGCCGAGTGAGTTTCGCTAGGCCTATCGTAGAGCTCGAGCGGAAGAGGCA
GCCAAGAGTCGGCCGGGATTGTTCCTCGCCGTGTCATTTCTAGGGCTCGT
TCCCCCGGCACGCAAAGTATCGCAGATCATCATGTCCTTACACGAGGCCG
GGGCCACTTCGGCGAGCTAGGGGTCGAGGCTATCTAATCGTTGCACTCGC
TCCCTAGCTGCCGTATCGCGTGCGGTCCTTTCCGCGTCGCCTCCACCACA
CCGACGATCAACCTTACTTGTACTACGGGTTCCGACGCTCGATAGATCGC
GGATACTCCTTTACAATCACAACCACAGGCTTTTCCTGCGCATGTATTCG
TTCGCTCATGCACACCGCGGGTTTTGTGCCTCTGCACACGCTTCTCTCGG
GATCAGGTGCGGGATCTGGTGGCAGAGAACGCGGATCTAAAGCTAGACGT
CCGGCGTGCCAGGGCAGAAATTTTGGTGGTCACTGCGGAACGACGGGGTT
TGGAAGAACGGTTTCTCCTCCGAACCCCCTCCCCTCAGCTGACGCCACCT
GTGGTTGAAAGCGGGAGTATCGCTGTTGGCAGTAGCGTCGCAAGCTTCGA
AGGTGGTGGGACGGAGAAGCCGCGTGGTCGCTTCACTCTCACCAGCGAAA
ACTCGACCGGCACGAGCGGTGCCCGTGATGATGGCATCCACAGGATGCAG
CGACCAGGCGTTGTGTTTTCCGGCGGGGGGTTTAGCGCCCCTAGTCTTGA
CGAACCAGAGCTCGCTGTTCTCGACTGCCCTCGACCGGCGGATGGCAGTT
ACCTTTCTGGCCGCCCTGCTGGTGGTGAAGGAAAAGGCCAGACCGGTGGT
AGCTCAAAAAGCAGCTGCTCTGAGTCAATAGCCGAGGGAGCTAACTCGAG
TGGCGACGGTGATCCTTCGAAGACTACGACAGCAGTGGAATCTGGAGCCA
GGGTCGACGACGCTGAACGAGGTGACGGACAGGACGCAGAAGGATGTTTG
TTCCCTGACCGAACTGTCGGCGACGGAGATGCCGCACCAACACCAGGCGA
GGCCACATGCGGCATCGACGACCACAAGTGTGAAAGGCAAGAAGAACTAC
ATGCCTATACGCTGGGTACACTCGCACAGCTGAAAGACGCGGCCGGCGGT
GGTGGCGAAAGCGCTGCCGCTTTGGCCACCGTGCAAGCCGCGAGAGGTAG
TGCCGCTGGCCACCCTCCCGATCTGGAGAGCGCTTGTCTCGACAGACCTA
CCGCTGACAGCCACCTCGATATTGAGACCTTTCGTGTCGACGAAAGTACT
GCTGACAACCATCTCGACCACGAGACCGTTCGTCTCGAAGACAGCGATCG
TGTTGCTTTCTCCCGAAGCGTTAGGCCCACACGGGCATGCTCCGTCTCCG
TCAAGATTGTGGGCGGAGCGTGCATAGACAGCTCGGACACGAGGGCAGAG
TCTACGCACCCAGCGAGTCGGCCAGGAGCCTTATTCCTTGCAGGGGGTGA
TGGCGAAGAGGAGAACGACTCTAGACGTTGTCCAATGGACGTGTTAAATT
CTGGGAATCAGGTCGTGGAAAGAGACACCAACTCAGCGAGTGACGACGGG
GATTGGAGCATTAGTACACGCATCTGTGGAGACAAAAGCGGTATGTGGCC
GTCTTCCAGTTTCATCTTGGCCCAAAGCCAGCGCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig167:31707..34693-

>mRNA_Ecto-sp13_S_contig167.4802.1 ID=mRNA_Ecto-sp13_S_contig167.4802.1|Name=mRNA_Ecto-sp13_S_contig167.4802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1659bp|location=Sequence derived from alignment at Ecto-sp13_S_contig167:31707..34693- (Ectocarpus species13 EcNAP12_S_4_19m)
GCATCGTCCTCCCTGGAGTGTGCGGTGGATTCTCTGCGATCAAAGGTGTC
CCATCTCGAGGACCAGCTTGAAAGGGCCGAAAGGGAACGCTTGGAGGTGA
TGGCGTACTCCTCTGATGAGAGTCGCGCCACATTTTCTGCAGCCGTTAAG
CCGGAATGCCCTGTCTGTCAAGTGGAGGTTAAGGAGGCCGTACTTGACCC
TTGCCGACACCTTGCGGCTTGCGCTTCATGTGCCAAGTCGCTCCAGAGTT
GTCCTCTTTGCAGCTGCCCCGTGCGAGGGTACCGGCCCCTGGAGAGCAGA
CAAGTATTCGAGCGCGTTTCAGCTTTGGAAGACGAAAGCGCCGGGATGAG
GGCGCAGTTGAAAAGGTTCAGCCGCCGAGTGCGGGATCTGGTGGCAGAGA
ACGCGGATCTAAAGCTAGACGTCCGGCGTGCCAGGGCAGAAATTTTGGTG
GTCACTGCGGAACGACGGGGTTTGGAAGAACGGTTTCTCCTCCGAACCCC
CTCCCCTCAGCTGACGCCACCTGTGGTTGAAAGCGGGAGTATCGCTGTTG
GCAGTAGCGTCGCAAGCTTCGAAGGTGGTGGGACGGAGAAGCCGCGTGGT
CGCTTCACTCTCACCAGCGAAAACTCGACCGGCACGAGCGGTGCCCGTGA
TGATGGCATCCACAGGATGCAGCGACCAGGCGTTGTGTTTTCCGGCGGGG
GGTTTAGCGCCCCTAGTCTTGACGAACCAGAGCTCGCTGTTCTCGACTGC
CCTCGACCGGCGGATGGCAGTTACCTTTCTGGCCGCCCTGCTGGTGGTGA
AGGAAAAGGCCAGACCGGTGGTAGCTCAAAAAGCAGCTGCTCTGAGTCAA
TAGCCGAGGGAGCTAACTCGAGTGGCGACGGTGATCCTTCGAAGACTACG
ACAGCAGTGGAATCTGGAGCCAGGGTCGACGACGCTGAACGAGGTGACGG
ACAGGACGCAGAAGGATGTTTGTTCCCTGACCGAACTGTCGGCGACGGAG
ATGCCGCACCAACACCAGGCGAGGCCACATGCGGCATCGACGACCACAAG
TGTGAAAGGCAAGAAGAACTACATGCCTATACGCTGGGTACACTCGCACA
GCTGAAAGACGCGGCCGGCGGTGGTGGCGAAAGCGCTGCCGCTTTGGCCA
CCGTGCAAGCCGCGAGAGGTAGTGCCGCTGGCCACCCTCCCGATCTGGAG
AGCGCTTGTCTCGACAGACCTACCGCTGACAGCCACCTCGATATTGAGAC
CTTTCGTGTCGACGAAAGTACTGCTGACAACCATCTCGACCACGAGACCG
TTCGTCTCGAAGACAGCGATCGTGTTGCTTTCTCCCGAAGCGTTAGGCCC
ACACGGGCATGCTCCGTCTCCGTCAAGATTGTGGGCGGAGCGTGCATAGA
CAGCTCGGACACGAGGGCAGAGTCTACGCACCCAGCGAGTCGGCCAGGAG
CCTTATTCCTTGCAGGGGGTGATGGCGAAGAGGAGAACGACTCTAGACGT
TGTCCAATGGACGTGTTAAATTCTGGGAATCAGGTCGTGGAAAGAGACAC
CAACTCAGCGAGTGACGACGGGGATTGGAGCATTAGTACACGCATCTGTG
GAGACAAAAGCGGTATGTGGCCGTCTTCCAGTTTCATCTTGGCCCAAAGC
CAGCGCTGA
back to top