prot_Ecto-sp13_S_contig14844.3696.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14844.3696.1
Unique Nameprot_Ecto-sp13_S_contig14844.3696.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length273
Homology
BLAST of mRNA_Ecto-sp13_S_contig14844.3696.1 vs. uniprot
Match: A0A6H5KCY0_9PHAE (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY0_9PHAE)

HSP 1 Score: 414 bits (1063), Expect = 8.060e-138
Identity = 221/224 (98.66%), Postives = 223/224 (99.55%), Query Frame = 0
Query:    1 RCLIVGLSALRKTQRGFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAVLTGLGEACPEWRALAKPLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLLRARKEA 224
            RCLIVGLSALRKTQ+GFDPAVLQET+EAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAV TGLGEACPEWRALAKPLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLLRARKEA
Sbjct:  275 RCLIVGLSALRKTQQGFDPAVLQETAEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAVFTGLGEACPEWRALAKPLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLLRARKEA 498          
BLAST of mRNA_Ecto-sp13_S_contig14844.3696.1 vs. uniprot
Match: D8LJJ0_ECTSI (MMS19 nucleotide excision repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ0_ECTSI)

HSP 1 Score: 411 bits (1056), Expect = 2.400e-130
Identity = 220/224 (98.21%), Postives = 221/224 (98.66%), Query Frame = 0
Query:    1 RCLIVGLSALRKTQRGFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAVLTGLGEACPEWRALAKPLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLLRARKEA 224
            RCLIVGLSALRKTQ+GFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAV  GLGEACPEWRALA PLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLLRARKEA
Sbjct:  229 RCLIVGLSALRKTQQGFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAVFAGLGEACPEWRALANPLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLLRARKEA 452          
BLAST of mRNA_Ecto-sp13_S_contig14844.3696.1 vs. uniprot
Match: K3WEQ0_GLOUD (MMS19 nucleotide excision repair protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEQ0_GLOUD)

HSP 1 Score: 97.4 bits (241), Expect = 4.050e-19
Identity = 75/225 (33.33%), Postives = 110/225 (48.89%), Query Frame = 0
Query:    2 CLIVGLSALRKTQRGFD--PAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAVLTGLGEACPEWRALAKPLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLLRARKEA 224
            CL +    L K +  FD   AVLQ+     FD  +CYFP+TFTPPPNDP+ I+ + L   L      S  +A HVLP LL+KLSS V  AK  SL+ +V    A+      +H+ +I  A+  E V G   ++   +L +++         A     G A   W      L   A++++TG    S++   + +VL AL   S LG    L  +VP L++   E+
Sbjct:  202 CLQIARELLAKLEVVFDRHDAVLQQ----YFDVVSCYFPITFTPPPNDPYGITSEELILSLRKAFAASDLLAKHVLPFLLEKLSSTVVEAKLDSLQTLVFCCEAYSINVALLHMLSIANALYHEVVKGEKKEVIEASLRAISRF-SSVIGLAKTKAAGGAAYAWNKFVVELTTRAMSDLTGHATDSLVSVSAGQVLAALGKDSVLGFTHVLETSVPLLIQQFNES 421          
BLAST of mRNA_Ecto-sp13_S_contig14844.3696.1 vs. uniprot
Match: W7U6Q4_9STRA (MMS19 nucleotide excision repair protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Q4_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.770e-19
Identity = 61/150 (40.67%), Postives = 85/150 (56.67%), Query Frame = 0
Query:    1 RCLIVGLSALRKTQRGFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASH 150
            RCLI+ L+ + + Q  F PA      EA+FD TACYFP+TFTPPPNDP+ I+PD L   L   L   P MA  +LP+L+DKL+S    AK  +L  +    R  G   +  +L ++ GA+ +E V  ++  + A AL    E  R  A+H
Sbjct:  249 RCLILCLNIISRVQVIF-PAASDAHIEALFDITACYFPITFTPPPNDPYGITPDVLSHALREALTRRPSMAEFLLPLLVDKLTSTHVPAKLEALLTLQVATRTIGMRAMLGNLASVTGALFQEIVSCAEAPVVAAAL----ETCRSLAAH 393          
BLAST of mRNA_Ecto-sp13_S_contig14844.3696.1 vs. uniprot
Match: A0A8K1CHX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHX8_PYTOL)

HSP 1 Score: 90.1 bits (222), Expect = 1.260e-16
Identity = 68/218 (31.19%), Postives = 104/218 (47.71%), Query Frame = 0
Query:    7 LSALRKTQRGFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAVLTGLGEACPEWRALAKPLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLLRARKEA 224
            +S L       D A+LQ+     FD  +CYFP+TFTPPPNDP+ I+ + L T L      S  +A HVLP LL+KLSS V+ AK  S++ +V    A+      ++L  I  A+  E V G   ++   +L ++T         A    +G A   W      L + A  ++ G+   S+    + + L A+   SA      L  ++P LL   K++
Sbjct:  205 MSTLASVFEKHDTAILQQ----YFDVVSCYFPITFTPPPNDPYGITSEDLITSLRKAFAASDLLARHVLPFLLEKLSSTVTEAKLDSIQTLVFCCEAYSINVTLLYLHTIATALYHEVVKGEKKEVIEASLKAITRFA-SLIGLAKTKSVGGAAYAWTKFVLELTKRATDDLRGNAVDSLASASAGQALAAIGKESAPAFTHVLEASIPLLLEQFKDS 417          
BLAST of mRNA_Ecto-sp13_S_contig14844.3696.1 vs. uniprot
Match: A0A5D6XS49_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS49_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.310e-16
Identity = 63/195 (32.31%), Postives = 95/195 (48.72%), Query Frame = 0
Query:   30 FDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAVLTGLGEACPEWRALAKPLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLLRARKEA 224
            FD  +CYFP+TFTPPPNDP+ I+ + L   L      S  +A H +P LL+KL+S V  AK  +L+ +V    A+    + +H+  +  A+  E V G   ++   AL ++          A     G A   W      L   A +++ G    S++   + RVL AL   SALG    L  AVP L++  +E+
Sbjct:  230 FDVVSCYFPITFTPPPNDPYGITSEELIGSLRRAFAASDLLAKHAVPFLLEKLASTVVEAKLDALQTLVFCCEAYAVNALLLHMVPVANALYHEVVKGERKEVIEAALGAIARFAG-VVGRAKTRAAGGAAYAWSKFVVELTARATSDLAGHAADSMVSVSAGRVLAALGRDSALGFAHVLDAAVPLLVQQFRES 423          
BLAST of mRNA_Ecto-sp13_S_contig14844.3696.1 vs. uniprot
Match: A0A316YNL1_9BASI (MMS19 nucleotide excision repair protein n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YNL1_9BASI)

HSP 1 Score: 88.2 bits (217), Expect = 5.980e-16
Identity = 52/131 (39.69%), Postives = 73/131 (55.73%), Query Frame = 0
Query:   17 FDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLA---ALALLSLTEVV 144
            +D  +  E +EA FD T CYFP+TF PPP+DP+ IS + LR  L  VL+ SP +APH +P+LL+KL +    AK  +L  +   +  FG      H   +  A   E +H +D   A   A AL SL +V+
Sbjct:  209 WDDIMDSELTEAFFDTTYCYFPITFRPPPDDPYGISTNTLRLSLRKVLIASPLLAPHAMPLLLEKLQASGGNAKRDTLDTLKEALPVFGRAAAKAHESPLWEAFKIEIMHATDDATAICSARALESLLQVL 339          
BLAST of mRNA_Ecto-sp13_S_contig14844.3696.1 vs. uniprot
Match: A0A5B7D836_PORTR (MMS19 nucleotide excision repair protein n=2 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7D836_PORTR)

HSP 1 Score: 87.8 bits (216), Expect = 7.250e-16
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = 0
Query:   22 LQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAVLTGLGEACPEWRALAKPLLEGAVAE 177
            L+   E +F+  A YFP+ F PP  DP+ I  + L  GL GVL  +P  AP  LP+L +KL S++++AK  SL  +VA    + A  +  H+R++  ++  E + G++ D+   AL +LT VVR       +  +G      RA A  L+E A+AE
Sbjct:  201 LEPFVEELFEVVAAYFPIEFVPPRGDPYAIQVEDLVLGLRGVLASTPLFAPFCLPLLQEKLDSDLTSAKLDSLHTLVACCEVYSAEAIHPHIRSLWDSLCREVMEGANKDVEEAALSALTAVVR-------VLEVGITTAASRAAAATLIEAAIAE 349          
BLAST of mRNA_Ecto-sp13_S_contig14844.3696.1 vs. uniprot
Match: A0A067CGL0_SAPPC (MMS19 nucleotide excision repair protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CGL0_SAPPC)

HSP 1 Score: 87.8 bits (216), Expect = 7.580e-16
Identity = 61/196 (31.12%), Postives = 100/196 (51.02%), Query Frame = 0
Query:   24 ETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLS-SEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAVLTGLGEACPEWRALAKPLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLL 218
            + ++  FDAT+CYFP+TF PPPNDP+ I+ + L   L  V VG   +A HVLPM+LDKLS + V    +  L+ +      +    + +H   +  A+    +HG +  + A+A+ +L  + R  +  + L G+      W      L+  AV ++    P S++  G+  VL A+A+    G    L+ A+  LL
Sbjct:  209 DVAKGFFDATSCYFPITFRPPPNDPYGITSEDLVLALRSVFVGHDSLAKHVLPMVLDKLSRTTVVEMTKDILETLAFCCAKYPLNRLLLHFTPVAAAVYHHVLHGDNTAVIAVAIDALKTITRAVSPPSKLPGMQALA--WNKCIVYLVNQAVEDLAHQAPDSMVSTGAGHVLCAIASVGVAGFSHVLSSALALLL 402          
BLAST of mRNA_Ecto-sp13_S_contig14844.3696.1 vs. uniprot
Match: A0A6P5AMX8_BRABE (MMS19 nucleotide excision repair protein n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AMX8_BRABE)

HSP 1 Score: 87.8 bits (216), Expect = 7.600e-16
Identity = 60/152 (39.47%), Postives = 82/152 (53.95%), Query Frame = 0
Query:    1 RCLIVGLSALRKTQRGFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAV 152
            R LI+  S  R   + F        +E  F+  ACYFP+ FTPP +DPH ++ + L  GL  VL  +   A   LPMLL+KLSS+V++AK  SL  + A    +GA G+   L  +  A+S+E  +    D+   AL  LT VV  T SHAV
Sbjct:  181 RNLIIAFSIARIIAQSFPIGTF---TEEFFEVVACYFPIDFTPPADDPHGVTREDLVLGLRQVLAATHQFAQFCLPMLLEKLSSDVTSAKLDSLHTLAACAEVYGADGLKSFLDLLLSAISKEVYNSIHQDIENAALTGLTAVVA-TLSHAV 328          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14844.3696.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCY0_9PHAE8.060e-13898.66MMS19 nucleotide excision repair protein (Fragment... [more]
D8LJJ0_ECTSI2.400e-13098.21MMS19 nucleotide excision repair protein n=1 Tax=E... [more]
K3WEQ0_GLOUD4.050e-1933.33MMS19 nucleotide excision repair protein n=1 Tax=G... [more]
W7U6Q4_9STRA7.770e-1940.67MMS19 nucleotide excision repair protein n=2 Tax=M... [more]
A0A8K1CHX8_PYTOL1.260e-1631.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XS49_9STRA2.310e-1632.31MMS19 nucleotide excision repair protein n=1 Tax=P... [more]
A0A316YNL1_9BASI5.980e-1639.69MMS19 nucleotide excision repair protein n=1 Tax=A... [more]
A0A5B7D836_PORTR7.250e-1635.90MMS19 nucleotide excision repair protein n=2 Tax=P... [more]
A0A067CGL0_SAPPC7.580e-1631.12MMS19 nucleotide excision repair protein n=2 Tax=S... [more]
A0A6P5AMX8_BRABE7.600e-1639.47MMS19 nucleotide excision repair protein n=1 Tax=B... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029240MMS19, N-terminalPFAMPF14500MMS19_Ncoord: 1..125
e-value: 3.9E-34
score: 118.4
IPR039920DNA repair/transcription protein MET18/MMS19PANTHERPTHR12891DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19coord: 1..232
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 194..214
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 215..273
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14844contigEcto-sp13_S_contig14844:1669..4152 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14844.3696.1mRNA_Ecto-sp13_S_contig14844.3696.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14844 1669..4152 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14844.3696.1 ID=prot_Ecto-sp13_S_contig14844.3696.1|Name=mRNA_Ecto-sp13_S_contig14844.3696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=273bp
RCLIVGLSALRKTQRGFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHN
ISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAG
VRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASH
AVLTGLGEACPEWRALAKPLLEGAVAEVTGDQPCSVLGRGSARVLLALAA
SSALGLRSALALAVPRLLRARKEAAAAAAAMKRDVSALEGGLTSGCCGGG
GGATAGGGGCCGGGGGGHKDAMV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029240MMS19_N
IPR039920MET18/MMS19