prot_Ecto-sp13_S_contig14667.3572.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14667.3572.1
Unique Nameprot_Ecto-sp13_S_contig14667.3572.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length53
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14667.3572.1 vs. uniprot
Match: D8LD41_ECTSI (SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD41_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 8.700e-14
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 
Query:   18 VWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 52
            VWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV
Sbjct:  142 VWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14667.3572.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD41_ECTSI8.700e-14100.00SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14667contigEcto-sp13_S_contig14667:798..956 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14667.3572.1mRNA_Ecto-sp13_S_contig14667.3572.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14667 428..1630 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14667.3572.1 ID=prot_Ecto-sp13_S_contig14667.3572.1|Name=mRNA_Ecto-sp13_S_contig14667.3572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
MCSVHAILMGMLIVPQQVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLA
AV*
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