mRNA_Ecto-sp13_S_contig14667.3572.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14667.3572.1
Unique NamemRNA_Ecto-sp13_S_contig14667.3572.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14667.3572.1 vs. uniprot
Match: D8LD41_ECTSI (SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD41_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.190e-11
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:  410 VPQQVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 526
            V   VWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV
Sbjct:  138 VRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14667.3572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD41_ECTSI4.190e-1192.31SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14667contigEcto-sp13_S_contig14667:428..1630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score69.7
Seed ortholog evalue4.6e-10
Seed eggNOG ortholog2880.D8LD41
Preferred nameSDHC
Model size1203
KEGG rclassRC00045
KEGG koko:K00236
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000104,GO:0002376,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006105,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006605,GO:0006626,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008177,GO:0008340,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010259,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017038,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0020037,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042721,GO:0042742,GO:0042773,GO:0042775,GO:0042886,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045087,GO:0045184,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0046906,GO:0046907,GO:0048037,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050789,GO:0050829,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0055086,GO:0055114,GO:0061024,GO:0065002,GO:0065007,GO:0070469,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072350,GO:0072521,GO:0072594,GO:0072655,GO:0072657,GO:0080134,GO:0090150,GO:0090151,GO:0097159,GO:0098542,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1902882,GO:1902883,GO:1902884,GO:1990204,GO:1990542
Exons1
EggNOG free text desc.succinate dehydrogenase activity
EggNOG OGsCOG2009@1,KOG0449@2759
Cds size159
COG Functional cat.C
BiGG ReactioniMM904.YMR118C,iND750.YMR118C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.8787699-UTR-Ecto-sp13_S_contig14667:427..7971681462782.8787699-UTR-Ecto-sp13_S_contig14667:427..797Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14667 428..797 +
1681462782.9083986-UTR-Ecto-sp13_S_contig14667:956..16301681462782.9083986-UTR-Ecto-sp13_S_contig14667:956..1630Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14667 957..1630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.9000764-CDS-Ecto-sp13_S_contig14667:797..9561681462782.9000764-CDS-Ecto-sp13_S_contig14667:797..956Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14667 798..956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14667.3572.1prot_Ecto-sp13_S_contig14667.3572.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14667 798..956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14667.3572.1

>prot_Ecto-sp13_S_contig14667.3572.1 ID=prot_Ecto-sp13_S_contig14667.3572.1|Name=mRNA_Ecto-sp13_S_contig14667.3572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
MCSVHAILMGMLIVPQQVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLA
AV*
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mRNA from alignment at Ecto-sp13_S_contig14667:428..1630+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14667.3572.1 ID=mRNA_Ecto-sp13_S_contig14667.3572.1|Name=mRNA_Ecto-sp13_S_contig14667.3572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14667:428..1630+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCACTCTCGTGGGTGACATGAGGTATCACGCCCCCTGAACCAATTTTCA
AAGCTTGACTACTCCACAGCAGAAGTAGTGCCCGTGCCGAAAATGGCAGC
GTGGGAACCGCCTCGTGGAAAACCTTTCCTAGAACATGTCATGGTTTGAT
TTGTGAGTTCTCCTCGTCGTTGAGTAATCCAGCTTGGCCATTGGATCTGG
GTGTGTGATAGCTGCTATTAAGCACGCACGGCTATTCGACCCTCGCTTCT
CCCTTTTCCTTCCGTGCATCGCAAAGTGCATTGGCGGATACGGAACCCCA
CCCTGTATTGACTACAAGTCATTTTGATGCAAGGAAGCCTTTGCGTGTGC
TGTGTCGATCGTCGTCACCGATGTGCTCTGTCCATGCAATTTTGATGGGA
ATGCTAATCGTCCCCCAACAGGTGTGGGATTACATGCCGGAAACTCTGCA
GACGGCCGGCGTGGCCAAGACGAGCTATGCGCTGCTTGGCGTCTCCGGAG
CCGTTAGCCTTGGTCTGGCAGCGGTGTAGCTCCCAGCAGCAACAGTCTGA
TACCCACCTTTGTATAGACATTTTTTAAGGGTTATCAAACCGTCGCATGC
GTGCTTGCGATGGTTGTCTTTCTTCAGAAAGTCGATTTTTGTCCAGTATA
ATACCTGTAGTGTGCTTGAAGGATGTGGACAGTGGTGTCGGTTTGTAGGG
AGGGGCACTAAAGGGGTTCATCCTGCAAGGATGCTCGTTTGCACGTGTGT
GCTTGCACGTATTCACGTGTGGACGTGTGCTTGGGAAGGAAGGAAGCTGT
CTATTGGGTAGCGCGTCATGCCGCTGGCCAGGCTAGTGGTTGCGGGATCA
AAAACCGCCCTCGCAGTTACTGTCGTTGTTGATCTGGAAGTCAAGGCGTT
GCCTGCGTGACAGGAACTAGCCGCTTAACGACCGCAATACGACCGCCAAT
AGTTGCGATGGCTGCGGGAGCACGACTTTGTAGAGGCCGGAGCAGGTGTA
TGAGATAGGTCGGCACGCATTGCTGCCGGATGGGTTGCGCACATCTGTAG
CACACAGCAGCATCCGGGAGTGGCCTTTGCAATGATGGCTCCAAGACAGA
AAAGCAGTGCAAAGTTTCGTATCAAGACACAAGTGATGTTTTTTGGGTTG
ACTGTTGGGGCCCCTCTCTTCTCATGCCCGCTTCGCCAACGACCCCTGTT
ACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14667:428..1630+

>mRNA_Ecto-sp13_S_contig14667.3572.1 ID=mRNA_Ecto-sp13_S_contig14667.3572.1|Name=mRNA_Ecto-sp13_S_contig14667.3572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14667:428..1630+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCTCTGTCCATGCAATTTTGATGGGAATGCTAATCGTCCCCCAACA
GGTGTGGGATTACATGCCGGAAACTCTGCAGACGGCCGGCGTGGCCAAGA
CGAGCTATGCGCTGCTTGGCGTCTCCGGAGCCGTTAGCCTTGGTCTGGCA
GCGGTGTAG
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