prot_Ecto-sp13_S_contig14567.3505.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14567.3505.1
Unique Nameprot_Ecto-sp13_S_contig14567.3505.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length413
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14567.3505.1 vs. uniprot
Match: A0A6H5LCS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCS2_9PHAE)

HSP 1 Score: 561 bits (1445), Expect = 9.510e-195
Identity = 322/373 (86.33%), Postives = 331/373 (88.74%), Query Frame = 0 
Query:   11 MPRAGDDDEEDEWRCLGDAREDETVGASRRRRNETRIRTRGPQGGESNNNSSAANGRSGRAARFSAARLSRNAXXXXXXXXXXXXXXXXSGAVTTKEVKGRCQSRGGAAAGVVGSSAAXXXXXXDNDDGTRGAGGRCKKRKSPRKVPRIFGIPVAWNVEDCDYDDSEDESYTQLSGGSGAPTNGATASAAKCTETRGSTSVSSATRSRVGRGGRRRGTDWMAELSTEVVLHGIIRTYLCSTSKCALQRTCNQMRRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQVSVETVIAQHLPGTNFV 383
            MPR+GDD+EE  WRCLGDAREDETVGASRRRRNETR RTRGPQGG S NNSSAANGRSGRAARFSAARL RNA  XXXXXXXXXXXXXXSGAVTTKE +GRCQS              XXX   +NDDGT  AG RCKKRKS RKVP IFGIPVAWNVEDCDYDDSEDESYTQ SGGSG PT GATA AAKCT+TRGSTSVSSATRSRV RGGRRRGTDWMAELS +VVLHGIIR YLCSTSKCALQRTCNQMRRLLD+PDAWETLDLRAH+IGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQ SVETVIAQHLPG   +
Sbjct:    1 MPRSGDDEEE--WRCLGDAREDETVGASRRRRNETRTRTRGPQGGASANNSSAANGRSGRAARFSAARLPRNAARXXXXXXXXXXXXXXSGAVTTKEGQGRCQSGXXXXXXXXXXXXXXXXSRSENDDGTPEAGERCKKRKSTRKVPGIFGIPVAWNVEDCDYDDSEDESYTQQSGGSGPPTVGATAFAAKCTKTRGSTSVSSATRSRVVRGGRRRGTDWMAELSADVVLHGIIRPYLCSTSKCALQRTCNQMRRLLDSPDAWETLDLRAHIIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVRHL 371
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BLAST of mRNA_Ecto-sp13_S_contig14567.3505.1 vs. uniprot
Match: D7FPP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP5_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 6.350e-93
Identity = 148/163 (90.80%), Postives = 150/163 (92.02%), Query Frame = 0 
Query:  231 MAELSTEVVLHGIIRTYLCSTSKCALQRTCNQMRRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQVSVETVIAQHLPGTNFVLRPYIAQQTG 393
            MAELSTEVVLHGIIR YLCSTSKCALQRTCNQM RLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQ SVETVIAQHLPG + +     A   G
Sbjct:    1 MAELSTEVVLHGIIRPYLCSTSKCALQRTCNQMHRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVHHLALEVDASNRG 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14567.3505.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LCS2_9PHAE9.510e-19586.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPP5_ECTSI6.350e-9390.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 231..377
e-value: 5.3E-9
score: 37.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14567contigEcto-sp13_S_contig14567:1019..4328 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14567.3505.1mRNA_Ecto-sp13_S_contig14567.3505.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14567 229..4384 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14567.3505.1 ID=prot_Ecto-sp13_S_contig14567.3505.1|Name=mRNA_Ecto-sp13_S_contig14567.3505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=413bp
MPPILSATLTMPRAGDDDEEDEWRCLGDAREDETVGASRRRRNETRIRTR
GPQGGESNNNSSAANGRSGRAARFSAARLSRNAARSSSRSSAKSSQNSSS
GAVTTKEVKGRCQSRGGAAAGVVGSSAASKSSRSDNDDGTRGAGGRCKKR
KSPRKVPRIFGIPVAWNVEDCDYDDSEDESYTQLSGGSGAPTNGATASAA
KCTETRGSTSVSSATRSRVGRGGRRRGTDWMAELSTEVVLHGIIRTYLCS
TSKCALQRTCNQMRRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQP
LFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTL
NLWKTYVEDERLPQPQVSVETVIAQHLPGTNFVLRPYIAQQTGHPTRHNW
GTAPCVRNTHSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf