mRNA_Ecto-sp13_S_contig14567.3505.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14567.3505.1
Unique NamemRNA_Ecto-sp13_S_contig14567.3505.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14567.3505.1 vs. uniprot
Match: A0A6H5LCS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCS2_9PHAE)

HSP 1 Score: 560 bits (1443), Expect = 4.920e-190
Identity = 322/373 (86.33%), Postives = 331/373 (88.74%), Query Frame = 2 
Query:  821 MPRAGDDDEEDEWRCLGDAREDETVGASRRRRNETRIRTRGPQGGESNNNSSAANGRSGRAARFSAARLSRNAXXXXXXXXXXXXXXXXSGAVTTKEVKGRCQSRGGAAAGVVGSSAAXXXXXXDNDDGTRGAGGRCKKRKSPRKVPRIFGIPVAWNVEDCDYDDSEDESYTQLSGGSGAPTNGATASAAKCTETRGSTSVSSATRSRVGRGGRRRGTDWMAELSTEVVLHGIIRTYLCSTSKCALQRTCNQMRRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQVSVETVIAQHLPGTNFV 1939
            MPR+GDD+EE  WRCLGDAREDETVGASRRRRNETR RTRGPQGG S NNSSAANGRSGRAARFSAARL RNA  XXXXXXXXXXXXXXSGAVTTKE +GRCQS              XXX   +NDDGT  AG RCKKRKS RKVP IFGIPVAWNVEDCDYDDSEDESYTQ SGGSG PT GATA AAKCT+TRGSTSVSSATRSRV RGGRRRGTDWMAELS +VVLHGIIR YLCSTSKCALQRTCNQMRRLLD+PDAWETLDLRAH+IGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQ SVETVIAQHLPG   +
Sbjct:    1 MPRSGDDEEE--WRCLGDAREDETVGASRRRRNETRTRTRGPQGGASANNSSAANGRSGRAARFSAARLPRNAARXXXXXXXXXXXXXXSGAVTTKEGQGRCQSGXXXXXXXXXXXXXXXXSRSENDDGTPEAGERCKKRKSTRKVPGIFGIPVAWNVEDCDYDDSEDESYTQQSGGSGPPTVGATAFAAKCTKTRGSTSVSSATRSRVVRGGRRRGTDWMAELSADVVLHGIIRPYLCSTSKCALQRTCNQMRRLLDSPDAWETLDLRAHIIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVRHL 371
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BLAST of mRNA_Ecto-sp13_S_contig14567.3505.1 vs. uniprot
Match: D7FPP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP5_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 1.840e-89
Identity = 148/163 (90.80%), Postives = 150/163 (92.02%), Query Frame = 2 
Query: 1481 MAELSTEVVLHGIIRTYLCSTSKCALQRTCNQMRRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQVSVETVIAQHLPGTNFVLRPYIAQQTG 1969
            MAELSTEVVLHGIIR YLCSTSKCALQRTCNQM RLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQ SVETVIAQHLPG + +     A   G
Sbjct:    1 MAELSTEVVLHGIIRPYLCSTSKCALQRTCNQMHRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVHHLALEVDASNRG 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14567.3505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LCS2_9PHAE4.920e-19086.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPP5_ECTSI1.840e-8990.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14567contigEcto-sp13_S_contig14567:229..4384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2085
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_000850.3
Cds size1239
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14567.3505.1prot_Ecto-sp13_S_contig14567.3505.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14567 1019..4328 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462777.3810503-UTR-Ecto-sp13_S_contig14567:228..10181681462777.3810503-UTR-Ecto-sp13_S_contig14567:228..1018Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14567 229..1018 +
1681462777.4530816-UTR-Ecto-sp13_S_contig14567:4328..43841681462777.4530816-UTR-Ecto-sp13_S_contig14567:4328..4384Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14567 4329..4384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462777.393778-CDS-Ecto-sp13_S_contig14567:1018..11091681462777.393778-CDS-Ecto-sp13_S_contig14567:1018..1109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14567 1019..1109 +
1681462777.4057794-CDS-Ecto-sp13_S_contig14567:1862..23731681462777.4057794-CDS-Ecto-sp13_S_contig14567:1862..2373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14567 1863..2373 +
1681462777.4148555-CDS-Ecto-sp13_S_contig14567:2644..27761681462777.4148555-CDS-Ecto-sp13_S_contig14567:2644..2776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14567 2645..2776 +
1681462777.423344-CDS-Ecto-sp13_S_contig14567:3157..33561681462777.423344-CDS-Ecto-sp13_S_contig14567:3157..3356Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14567 3158..3356 +
1681462777.4333963-CDS-Ecto-sp13_S_contig14567:3637..37781681462777.4333963-CDS-Ecto-sp13_S_contig14567:3637..3778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14567 3638..3778 +
1681462777.4427114-CDS-Ecto-sp13_S_contig14567:4163..43281681462777.4427114-CDS-Ecto-sp13_S_contig14567:4163..4328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14567 4164..4328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14567.3505.1

>prot_Ecto-sp13_S_contig14567.3505.1 ID=prot_Ecto-sp13_S_contig14567.3505.1|Name=mRNA_Ecto-sp13_S_contig14567.3505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=413bp
MPPILSATLTMPRAGDDDEEDEWRCLGDAREDETVGASRRRRNETRIRTR
GPQGGESNNNSSAANGRSGRAARFSAARLSRNAARSSSRSSAKSSQNSSS
GAVTTKEVKGRCQSRGGAAAGVVGSSAASKSSRSDNDDGTRGAGGRCKKR
KSPRKVPRIFGIPVAWNVEDCDYDDSEDESYTQLSGGSGAPTNGATASAA
KCTETRGSTSVSSATRSRVGRGGRRRGTDWMAELSTEVVLHGIIRTYLCS
TSKCALQRTCNQMRRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQP
LFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTL
NLWKTYVEDERLPQPQVSVETVIAQHLPGTNFVLRPYIAQQTGHPTRHNW
GTAPCVRNTHSS*
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mRNA from alignment at Ecto-sp13_S_contig14567:229..4384+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14567.3505.1 ID=mRNA_Ecto-sp13_S_contig14567.3505.1|Name=mRNA_Ecto-sp13_S_contig14567.3505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14567:229..4384+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGTCATTGCCGCGCAAGCGCGGCACACCTTCAGCCGGTATTCGTGAT
CGCTGGTCGATCAGGTGTGCGCGCCAAAGAAACTCGCGTGGCGATCCCAA
TGTTCATTTTCGTTTCAGAGTGTGCGGGAAATATGTGCTGCAGCTGCAAG
CAAGTGTCCTACTTGCTGCCGCTGGGGGTGCTTCGCTTTGTCCGCTTCCT
CTCCGCCGTGTCGGGCTACTTACCTGCACCTACTACGCGGGAGACAGAGC
GACGTCCGCCCTTGTACAGTATCTCCTAGAAGTAACGAAATTGACGTAGA
AGGCAGAAACCAGGACATGATATCTACCCCGAGTTTTGCCGAGTCTTCGT
AAAGTATCGTTTGAGCAGTACAGAGTAGACTGCGATGGAGTTACGCTGCG
CCAACAGCAATGTTTCTTTCAAACACCTTCCTCCTCCCTTTCCACCCCGT
CCTCCCGGCGCGCCGTCTGGTGCGTGTGCCACCTTGTAAGCTCGGATGTG
GGCTTATTTTCGCGCGCCTGTAGGTCGGGGTCTCGATTGGTTCAAATGGT
TGTATTTTTCTTTCAGCACGAAAGGTATGGGTGGAGAGACCGTGATGACC
AACCAACACACAGACAGGACGTCGCTCATTTGCCGCAGTTACAGAATGCC
GCTGTTAGCAAACAATGTAGACAGTCCTCTCAGCATGTCTGTTCCACATG
TGATGGTCTGATGATCTCTTCACTTTGCGCACGTCGCGCGCGACTCCACC
GTGTATTCTGCGATACGTCCCCCAGCACGCAACAATCCGCATGCCACCGA
TCCTCTCCGCCACCCTGACGATGCCACGCGCGGGTGATGACGACGAGGAG
GACGAGTGGCGCTGCTTGGGAGATGCACGAGGTGCATCTTATAGGTAGAA
GGGTAAAGCACGCGCTTCTGTCTTGTCGCAAATCTCATATGGAGTACACC
GAATGGTCTACGATTTAGCAGTAGATGACTCTTGTATTCTGTGAGTGCGG
CTTCGACGTGTCGGGTGCATGTGAAGTAGCGCTGATCGGCAGCGTATGCT
GCGTGGGGTGAAGCAATCACTAATAACTACGCGTGACTCTTCGTCACTTT
TCCCGCCAACGGCTGCCTTATGCATAACTAGCCTTGAACCTACGGTGGAG
AACTGACGTTCAAGATATGTGGCAGAGTAAAGAACGTTCTTTAGATCGTT
CTACGGAGGCTTGTTGGATGGGGCCGCGGGTTCTGGGACTGTTGCGAAAG
CTGTTCGAAAGTGTTGGTTTACGGAGTAAGTTCACATGAAAGTGTTGTCT
TCTGCGAAACGTTCGAAGAACACGAATCAAGAGCTGAATGAATACCAGCA
GTGCCAATAATATCTTCAAGAACGGTCCTCTGTTTTCACGAACTTTTGTA
TGCATACACGATGCGAAGTACAAAACAACAACCGAAGTCCCTCCGGTAGC
TCGAGGACCCTGTTGTCGTCAACGGTTCTCGGGTTCCGCGAACGTTCCTT
CGAACCAACCACGTGCACGACAAATTACGGCGCCCACCACCATACACACG
CCCAGTCGCCAACAACAATAACAACAACAAATAATGAAAAAATAAAAGTA
ATAATAATAATAATAAAATAATAACAATTCGCAGAGGATGAAACCGTCGG
AGCCTCGAGGAGAAGAAGAAATGAAACACGAATCCGAACACGGGGTCCTC
AAGGTGGAGAAAGCAACAACAACAGCAGTGCCGCCAACGGTAGGAGTGGC
CGCGCGGCGCGGTTCTCCGCAGCGCGCCTTTCGCGGAACGCGGCCCGATC
AAGCTCGAGGTCCTCCGCCAAGAGCAGTCAGAACAGCAGTTCGGGAGCGG
TGACGACGAAGGAAGTGAAAGGCCGGTGCCAGAGCAGAGGAGGCGCTGCT
GCTGGTGTCGTTGGCAGCTCCGCCGCCTCCAAGTCATCGCGGAGCGATAA
TGACGATGGAACACGGGGGGCGGGTGGGAGGTGCAAGAAAAGGAAGAGCC
CGAGGAAAGTTCCGAGAATTTTCGGGATTCCCGTGGCCTGGAATGTAGAG
GACTGCGACTACGATGATTCTGAGGATGAAAGCTACACACAGCTGTCTGG
AGGCTCCGGAGCACCGACTAATGGAGCCACTGCATCTGCCGCCAAGTAAG
GCCAGATTCTGTTTGGGTTTCGGAGAGAGCTGGGGGTTCGCCTGACTGCT
ACGAAGAGGATCGATTCCTTGCAGCAGTTTTTTCGTTCGCTTTTTTGGAG
GTTGTCAACCCAGCACGTCCTGTGGGCAGACTTGAAACATATATTCGCGC
CTGTACACGGCAGTGCTACCGTAGACTTGAAAAAATTGGCATCAAAATAC
CTCTCTGGCGTAGTTGCTACGACTTCTATGTGACGCGTCATATGGCCACC
CTCCTGCTTCTACCAGGTGTACAGAAACACGGGGTTCGACATCGGTTTCC
TCAGCGACACGTTCAAGAGTAGGAAGAGGGGGGCGGCGGCGAGGGACCGA
CTGGATGGCAGAACTGTCAACTGAGGTGGTGCTCCATGGAATCATTCGGT
AAGCGAGGTTCTATACTACCGCTTTACCTACAAAATATAACACTAAACGT
CGTCGGGGGGTGACGGGCGCTTGAAAACCTTTGGAAGAGTTGGTAGAGGG
CATTGAAGGGGTGCATGGCCTTTCCTTTTGGTCCCCGTGTTACCCGAATC
CACAACGCTGGGGGCCGCTCAAGCACAACGTCGTCGGCAAGAGCATCACT
CCGTGCAAGAGACTGCGACCAGATTATGCACGCCAACATCGAAACGGAAC
GTGAAATAATCTTTCAAGAGATGAAAGCTTTGCTCCGACTACCACTGGGA
TGCTTCGTCAGTGAACAGCCAAAGGACTAGGGAAAGCAGCGATAAATTAC
TTCCTTCCCACCCCCCTGCGTATTTGTAGGACGTACCTGTGCTCCACTTC
CAAGTGCGCGCTCCAGCGGACTTGCAATCAGATGCGTCGCCTTTTGGACA
CGCCAGACGCTTGGGAGACCCTGGACTTGCGAGCGCATGTTATCGGCAGG
CGCACCATGAAGTCTGGTCGTCAGTCCATTCTGAGCCGGCAGCCCCTCTT
TTTTTTAGCACGCAGCGTTGTGCAGCAGGTAGGATATGGTGCTCTACTTG
GGTTGTGGTAATAATTGTGACGTGCGGAGTGGGGGCACGCACACTGTCCT
GAGAAGCATTTGTATCGTTGTATTTTTTTTTCTCTCTTTACTCCATCATA
GCGCCAACTTTTGTCGCCGACCACAGCGCTGTTCTTCGTCGCCCGGTAAT
GCTACTGATGTGGCATGAGGCAGATAACGAGTCCCAACTCCATTGATTTT
CTCTGATGCGCATCACCCGGTCCCATCTTTCAATACCACTGTCGTTCCGA
AAAAAACAGCCGCGTTTCTCGCTGCTGAAGACGGTGGACATGCAAGGTCT
CAATCTTGGAGCTATGGGATCAACGCCCGACCTTCTGGTGACGTTGTTCG
AGAGCTGTCGCCACATCACCACCCTCAACCTCTGGAAGACCTACGTCGAG
GTTGGTTTTTACTGCGGTGTTGCTGTAGGACTCGAGCTGTTTACGACTTG
GGTGGGATTGATTGGCGTGCTTCATGGGTGGTGTGCGACGGCGATTTGTA
CGATTGTGTGTCGAGGTTGCCAGTGATTTGGACCCTTCCAGTGCCTCAAC
CAAAATTACCACCCTTTCGAGGAGCCCTCTCCCGGGAATGCTATCCTACA
GTATACGGGATCGGACGCATGCAGAAAATAGTGAGGCCGGCAGGTTGATG
ATTTCGTCAGGTACCCTGTTTGATTAGCCCGTGCCCATCAAGCTCTTTGT
TTCACTGTTAGTCATGCCGAGTTCCTCAATATGGTTCCACTTATGTGACA
CGGCTTTTTGTCGATGTTTGATCTTCCGTTTTCAGGACGAGAGATTGCCG
CAGCCGCAAGTCTCGGTGGAAACCGTTATCGCGCAGCACCTCCCAGGTAC
AAATTTTGTTCTACGTCCATACATTGCTCAGCAGACTGGACACCCTACGC
GGCACAATTGGGGCACGGCACCCTGTGTCCGAAACACCCACTCCTCGTAA
AAATAGCCTGCACTCGTCCTAGATGTACCCGCTGCTTGTTAAGAGCGGCA
AATGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14567:229..4384+

>mRNA_Ecto-sp13_S_contig14567.3505.1 ID=mRNA_Ecto-sp13_S_contig14567.3505.1|Name=mRNA_Ecto-sp13_S_contig14567.3505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1239bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14567:229..4384+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCACCGATCCTCTCCGCCACCCTGACGATGCCACGCGCGGGTGATGA
CGACGAGGAGGACGAGTGGCGCTGCTTGGGAGATGCACGAGAGGATGAAA
CCGTCGGAGCCTCGAGGAGAAGAAGAAATGAAACACGAATCCGAACACGG
GGTCCTCAAGGTGGAGAAAGCAACAACAACAGCAGTGCCGCCAACGGTAG
GAGTGGCCGCGCGGCGCGGTTCTCCGCAGCGCGCCTTTCGCGGAACGCGG
CCCGATCAAGCTCGAGGTCCTCCGCCAAGAGCAGTCAGAACAGCAGTTCG
GGAGCGGTGACGACGAAGGAAGTGAAAGGCCGGTGCCAGAGCAGAGGAGG
CGCTGCTGCTGGTGTCGTTGGCAGCTCCGCCGCCTCCAAGTCATCGCGGA
GCGATAATGACGATGGAACACGGGGGGCGGGTGGGAGGTGCAAGAAAAGG
AAGAGCCCGAGGAAAGTTCCGAGAATTTTCGGGATTCCCGTGGCCTGGAA
TGTAGAGGACTGCGACTACGATGATTCTGAGGATGAAAGCTACACACAGC
TGTCTGGAGGCTCCGGAGCACCGACTAATGGAGCCACTGCATCTGCCGCC
AAGTGTACAGAAACACGGGGTTCGACATCGGTTTCCTCAGCGACACGTTC
AAGAGTAGGAAGAGGGGGGCGGCGGCGAGGGACCGACTGGATGGCAGAAC
TGTCAACTGAGGTGGTGCTCCATGGAATCATTCGGACGTACCTGTGCTCC
ACTTCCAAGTGCGCGCTCCAGCGGACTTGCAATCAGATGCGTCGCCTTTT
GGACACGCCAGACGCTTGGGAGACCCTGGACTTGCGAGCGCATGTTATCG
GCAGGCGCACCATGAAGTCTGGTCGTCAGTCCATTCTGAGCCGGCAGCCC
CTCTTTTTTTTAGCACGCAGCGTTGTGCAGCAGCCGCGTTTCTCGCTGCT
GAAGACGGTGGACATGCAAGGTCTCAATCTTGGAGCTATGGGATCAACGC
CCGACCTTCTGGTGACGTTGTTCGAGAGCTGTCGCCACATCACCACCCTC
AACCTCTGGAAGACCTACGTCGAGGACGAGAGATTGCCGCAGCCGCAAGT
CTCGGTGGAAACCGTTATCGCGCAGCACCTCCCAGGTACAAATTTTGTTC
TACGTCCATACATTGCTCAGCAGACTGGACACCCTACGCGGCACAATTGG
GGCACGGCACCCTGTGTCCGAAACACCCACTCCTCGTAA
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