prot_Ecto-sp13_S_contig14493.3454.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14493.3454.1
Unique Nameprot_Ecto-sp13_S_contig14493.3454.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length444
Homology
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: D8LHZ2_ECTSI (Denticleless homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ2_ECTSI)

HSP 1 Score: 548 bits (1413), Expect = 2.500e-185
Identity = 336/445 (75.51%), Postives = 351/445 (78.88%), Query Frame = 0
Query:    1 RSSYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSASSPTIAGARASARSSGGALGSGPXXXXXXXXXXXXXVGAVSGSGGGVRSYPCHGKFGEGGARRGESSLWRRRVPVDDRDGDQRGHCGDDRGPLVSRSDGAGGQQQVWAVGVERRRDGDGGRGSRGQGRQSHSRGTGERMNAAXXXXXXXXXXXXXSTAVFSPCSPNKRPVASSAXXXXXXXXXXG-DAAAVDGGSIATAPAHGDTSQLFQASSNSGGMTSGEDTPDENMDSRRAIGASTEPXXXXXXXXXVVFAAKGQQQRGGSRKGNRRGIMEGLPSGVSSAAWHGKGFPEPGRGRRPRQHPDGEQHQ-RGETTGARKRAKKGASGQQLLSESHTLTAFWCRGRGGASSGAGQGKAGSS 443
            RSSYYIKAKLSPDGSLLASGA DD VCLWQVDCPGLP+ARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSAS+P +A A ASARSSGGALG      XXXXXXXXXX    SGSGGGVRSYPCHGKFGEGGARRGESSLWRRR PV +RDGDQ GH GD RGPLVSR DG+                       +G+  QSHSRGTGER +AA XXXXXXXXXXX   AVFSPCSPNKRP   S+          G  AAAV GG IATAPAHGDTSQ FQASSN+GG TSGEDTPDEN+DSRRAI AS EP         VV  +KGQQQ GGSRKG RRG+MEGLP GVSSAAWHGKGFPEPGRGRRPRQHPDGEQ Q R E TG+RK+AKKGASGQQL  ESHTL AFWCRGRGGASSG GQGKAGSS
Sbjct:  463 RSSYYIKAKLSPDGSLLASGATDDAVCLWQVDCPGLPVARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSASAPVVAVAGASARSSGGALG------XXXXXXXXXXXXXXSGSGGGVRSYPCHGKFGEGGARRGESSLWRRRAPVGNRDGDQHGHGGDVRGPLVSRGDGSRXXXXXXXXXXXXXXXXXXXXXXQGRDHQSHSRGTGERTDAAAXXXXXXXXXXXP--AVFSPCSPNKRPGPFSSRPAETAARAKGATAAAVGGGGIATAPAHGDTSQRFQASSNNGGTTSGEDTPDENVDSRRAIDASAEPPTPPTTGSGVVAVSKGQQQTGGSRKGGRRGVMEGLPRGVSSAAWHGKGFPEPGRGRRPRQHPDGEQQQQRQEATGSRKKAKKGASGQQLPRESHTLMAFWCRGRGGASSGVGQGKAGSS 899          
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: A0A6H5JL80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL80_9PHAE)

HSP 1 Score: 485 bits (1249), Expect = 1.510e-167
Identity = 317/401 (79.05%), Postives = 328/401 (81.80%), Query Frame = 0
Query:   45 MNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSASSPTIAGARASARSSGGALGSGPXXXXXXXXXXXXXVGAVSGSGGGVRSYPCHGKFGEGGARRGESSLWRRRVPVDDRDGDQRGHCGDDRGPLVSRSDGAGGQQQVWAVGVERRRDGDGGRGSRGQGRQSHSRGTGERMNAAXXXXXXXXXXXXXSTAVFSPCSPNKRPVASSAXXXXXXXXXXGDAAAVDGGSIATAPAHGDTSQLFQASSNSGGMTSGEDTPDENMDSRRAIGASTEPXXXXXXXXXVVFAAKG-QQQRGGSRKGNRRGIMEGLPSGVSSAAWHGKGFPEPGRGRRPRQHPDG-EQHQRGETTGARKRAKKGASGQQLLSESHTLTAFWCRGRGGASSGAGQGKAGSS 443
            MNEVTGLDWCRAEPLKLATSSDDETVRVWTIDP+RVRH SAS+P +AGA ASARSSG ALGS P  XXXXXXXXX  VGAVSG GG VRSYPCHGKFGEGGARRGESSLWRRR PVD+RDGDQ  HCGDDRGPLVSR DG+GGQQQ+ A GV+ RRDGDG    RGQG QSHSRGTGERMNA XXXXXXXXXXXX STAVFSPCSPN RP ASSA       XXX          IATAPAH DTSQLFQASSNS   +SG DT DENM  RR IGAS EPXXXXXX   VV  AKG QQ+  GSRKG RRGIMEGLP GVSSAAWHGKGFPEP RGRRPRQHPDG EQ QR E TG+RK+AKKGASGQQL  ESHTL AFWCRGRGGASSGAGQ KAGSS
Sbjct:    1 MNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPVRVRHRSASAPVVAGAGASARSSG-ALGSDPDAXXXXXXXXXSSVGAVSGGGGEVRSYPCHGKFGEGGARRGESSLWRRRAPVDNRDGDQHAHCGDDRGPLVSRGDGSGGQQQIRAAGVDSRRDGDGXXXXRGQGHQSHSRGTGERMNAXXXXXXXXXXXXX-STAVFSPCSPNMRPGASSARPAETAAXXXXXXXXXXXXXIATAPAHDDTSQLFQASSNSE-TSSGADTMDENMGIRRVIGASAEPXXXXXXGSDVVAVAKGHQQETRGSRKGGRRGIMEGLPRGVSSAAWHGKGFPEPERGRRPRQHPDGVEQQQRPEATGSRKKAKKGASGQQLSRESHTLMAFWCRGRGGASSGAGQEKAGSS 398          
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: A0A7S1EDB8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EDB8_HEMAN)

HSP 1 Score: 85.5 bits (210), Expect = 3.750e-16
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0
Query:    3 SYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLR 79
            S+Y+K+  SPDG  + SG++D+ V +W V  P LP  RL GH  EV+ + WC  +  K+A+SSDD TVRVW +D  R
Sbjct:   73 SFYVKSSFSPDGRYVVSGSSDECVYVWDVATPLLPPVRLVGHKGEVSDVRWCPTDMCKIASSSDDTTVRVWNVDRAR 149          
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: A0A6H5JP24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP24_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 7.950e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0
Query:    1 RSSYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLT 42
            RSSYYIKAKLSPDGSLLASGAADD VCLWQVDCPGLP+ARLT
Sbjct:  471 RSSYYIKAKLSPDGSLLASGAADDAVCLWQVDCPGLPVARLT 512          
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: A0A8J8XPD9_MAIZE (Denticleless n=6 Tax=Zea mays TaxID=4577 RepID=A0A8J8XPD9_MAIZE)

HSP 1 Score: 82.8 bits (203), Expect = 2.480e-13
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 0
Query:    4 YYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSASSPTIAGARA 95
            +++K+ +SPDG+ +  G++D  V LWQVD P    A L GH  E T +DWC +E  K+ATSSDD TVRVW+   +   +   SSPT+   RA
Sbjct:  383 FFVKSAISPDGTHILGGSSDGNVYLWQVDQPESVTAVLKGHEGEATSVDWCASEVGKIATSSDDSTVRVWSTKKMDCTN--VSSPTVIRKRA 472          
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: V9L0G8_CALMI (Denticleless protein-like protein (Fragment) n=1 Tax=Callorhinchus milii TaxID=7868 RepID=V9L0G8_CALMI)

HSP 1 Score: 81.6 bits (200), Expect = 3.450e-13
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 0
Query:    2 SSYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTID 76
            S++Y+K+ LSPDG  L SG++D+   +W+V  P  P   L GH  EVT + WC ++  K+AT SDD TVR+W +D
Sbjct:  316 STFYVKSSLSPDGQFLLSGSSDNNAYIWKVSNPRQPPTVLQGHSQEVTSVTWCPSDFTKIATCSDDNTVRIWRLD 390          
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: A0A4Z2IFB5_9TELE (Denticleless n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2IFB5_9TELE)

HSP 1 Score: 76.6 bits (187), Expect = 3.880e-13
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 0
Query:    2 SSYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTI 75
            SS+Y+K+ +SPD   LASG++D+   +W++  P  P   L GH  EVT + WC  +  K+A+ SDD TVR+W +
Sbjct:   23 SSFYVKSTISPDDQFLASGSSDNNAYVWKISDPKQPPMMLQGHSEEVTSVSWCPTDFTKIASCSDDHTVRIWRL 96          
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: UPI001263BC89 (denticleless protein homolog A-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001263BC89)

HSP 1 Score: 78.2 bits (191), Expect = 6.190e-13
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    3 SYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTI 75
            S+Y+KA +SPD + + SG++D    +WQV+ P L    L  H  EVT +DWC  E  K+ATSSDD TVR+W I
Sbjct:   27 SFYVKAAISPDAAHILSGSSDGTAYVWQVNKPQLDPVMLKSHDGEVTAVDWCPFETGKMATSSDDFTVRLWNI 99          
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: C5WNV5_SORBI (Uncharacterized protein n=11 Tax=Andropogoneae TaxID=147429 RepID=C5WNV5_SORBI)

HSP 1 Score: 81.3 bits (199), Expect = 7.960e-13
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 0
Query:    3 SYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSASSPTI 90
            S+++K+ +SPDG+ +  G++D  V LWQVD P      L GH  E T +DWC +E  K+ATSSDD TVRVW+   +   +   SSPT+
Sbjct:  330 SFFVKSAISPDGTHILGGSSDGNVYLWQVDRPESAPIVLKGHEGEATSVDWCASEVGKIATSSDDSTVRVWSTKKMDCTN--VSSPTV 415          
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: A0A4W3I9B0_CALMI (Uncharacterized protein n=4 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3I9B0_CALMI)

HSP 1 Score: 81.6 bits (200), Expect = 7.980e-13
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 0
Query:    2 SSYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTID 76
            S++Y+K+ LSPDG  L SG++D+   +W+V  P  P   L GH  EVT + WC ++  K+AT SDD TVR+W +D
Sbjct:  313 STFYVKSSLSPDGQFLLSGSSDNNAYIWKVSNPRQPPTVLQGHSQEVTSVTWCPSDFTKIATCSDDNTVRIWRLD 387          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHZ2_ECTSI2.500e-18575.51Denticleless homolog n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JL80_9PHAE1.510e-16779.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1EDB8_HEMAN3.750e-1648.05Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6H5JP24_9PHAE7.950e-1595.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J8XPD9_MAIZE2.480e-1345.65Denticleless n=6 Tax=Zea mays TaxID=4577 RepID=A0A... [more]
V9L0G8_CALMI3.450e-1346.67Denticleless protein-like protein (Fragment) n=1 T... [more]
A0A4Z2IFB5_9TELE3.880e-1343.24Denticleless n=1 Tax=Liparis tanakae TaxID=230148 ... [more]
UPI001263BC896.190e-1349.32denticleless protein homolog A-like n=1 Tax=Pistac... [more]
C5WNV5_SORBI7.960e-1345.45Uncharacterized protein n=11 Tax=Andropogoneae Tax... [more]
A0A4W3I9B0_CALMI7.980e-1346.67Uncharacterized protein n=4 Tax=Callorhinchus mili... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 1..30
e-value: 260.0
score: 1.8
coord: 34..74
e-value: 6.4E-6
score: 35.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 10..29
e-value: 0.22
score: 12.4
coord: 38..73
e-value: 7.2E-5
score: 23.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..32
score: 8.938
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 41..76
score: 10.809
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 7..96
e-value: 4.9E-17
score: 64.3
NoneNo IPR availablePANTHERPTHR22852LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEINcoord: 2..285
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..83
score: 14.819
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 4..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14493contigEcto-sp13_S_contig14493:830..3587 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14493.3454.1mRNA_Ecto-sp13_S_contig14493.3454.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14493 830..3587 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14493.3454.1 ID=prot_Ecto-sp13_S_contig14493.3454.1|Name=mRNA_Ecto-sp13_S_contig14493.3454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=444bp
RSSYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTG
LDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSASSPTIAGARASARSS
GGALGSGPAAAAAAAVGGGSSVGAVSGSGGGVRSYPCHGKFGEGGARRGE
SSLWRRRVPVDDRDGDQRGHCGDDRGPLVSRSDGAGGQQQVWAVGVERRR
DGDGGRGSRGQGRQSHSRGTGERMNAAASGGGGNWGGGGGSTAVFSPCSP
NKRPVASSARPAETAARAKGDAAAVDGGSIATAPAHGDTSQLFQASSNSG
GMTSGEDTPDENMDSRRAIGASTEPPPPPTTGSDVVFAAKGQQQRGGSRK
GNRRGIMEGLPSGVSSAAWHGKGFPEPGRGRRPRQHPDGEQHQRGETTGA
RKRAKKGASGQQLLSESHTLTAFWCRGRGGASSGAGQGKAGSS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf