mRNA_Ecto-sp13_S_contig14493.3454.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14493.3454.1
Unique NamemRNA_Ecto-sp13_S_contig14493.3454.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: D8LHZ2_ECTSI (Denticleless homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ2_ECTSI)

HSP 1 Score: 548 bits (1413), Expect = 2.500e-185
Identity = 336/445 (75.51%), Postives = 351/445 (78.88%), Query Frame = 1 
Query:    1 RSSYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSASSPTIAGARASARSSGGALGSGPXXXXXXXXXXXXXVGAVSGSGGGVRSYPCHGKFGEGGARRGESSLWRRRVPVDDRDGDQRGHCGDDRGPLVSRSDGAGGQQQVWAVGVERRRDGDGGRGSRGQGRQSHSRGTGERMNAAXXXXXXXXXXXXXSTAVFSPCSPNKRPVASSAXXXXXXXXXXG-DAAAVDGGSIATAPAHGDTSQLFQASSNSGGMTSGEDTPDENMDSRRAIGASTEPXXXXXXXXXVVFAAKGQQQRGGSRKGNRRGIMEGLPSGVSSAAWHGKGFPEPGRGRRPRQHPDGEQHQ-RGETTGARKRAKKGASGQQLLSESHTLTAFWCRGRGGASSGAGQGKAGSS 1329
            RSSYYIKAKLSPDGSLLASGA DD VCLWQVDCPGLP+ARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSAS+P +A A ASARSSGGALG      XXXXXXXXXX    SGSGGGVRSYPCHGKFGEGGARRGESSLWRRR PV +RDGDQ GH GD RGPLVSR DG+                       +G+  QSHSRGTGER +AA XXXXXXXXXXX   AVFSPCSPNKRP   S+          G  AAAV GG IATAPAHGDTSQ FQASSN+GG TSGEDTPDEN+DSRRAI AS EP         VV  +KGQQQ GGSRKG RRG+MEGLP GVSSAAWHGKGFPEPGRGRRPRQHPDGEQ Q R E TG+RK+AKKGASGQQL  ESHTL AFWCRGRGGASSG GQGKAGSS
Sbjct:  463 RSSYYIKAKLSPDGSLLASGATDDAVCLWQVDCPGLPVARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSASAPVVAVAGASARSSGGALG------XXXXXXXXXXXXXXSGSGGGVRSYPCHGKFGEGGARRGESSLWRRRAPVGNRDGDQHGHGGDVRGPLVSRGDGSRXXXXXXXXXXXXXXXXXXXXXXQGRDHQSHSRGTGERTDAAAXXXXXXXXXXXP--AVFSPCSPNKRPGPFSSRPAETAARAKGATAAAVGGGGIATAPAHGDTSQRFQASSNNGGTTSGEDTPDENVDSRRAIDASAEPPTPPTTGSGVVAVSKGQQQTGGSRKGGRRGVMEGLPRGVSSAAWHGKGFPEPGRGRRPRQHPDGEQQQQRQEATGSRKKAKKGASGQQLPRESHTLMAFWCRGRGGASSGVGQGKAGSS 899
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: A0A6H5JL80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL80_9PHAE)

HSP 1 Score: 485 bits (1249), Expect = 1.510e-167
Identity = 317/401 (79.05%), Postives = 328/401 (81.80%), Query Frame = 1 
Query:  133 MNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSASSPTIAGARASARSSGGALGSGPXXXXXXXXXXXXXVGAVSGSGGGVRSYPCHGKFGEGGARRGESSLWRRRVPVDDRDGDQRGHCGDDRGPLVSRSDGAGGQQQVWAVGVERRRDGDGGRGSRGQGRQSHSRGTGERMNAAXXXXXXXXXXXXXSTAVFSPCSPNKRPVASSAXXXXXXXXXXGDAAAVDGGSIATAPAHGDTSQLFQASSNSGGMTSGEDTPDENMDSRRAIGASTEPXXXXXXXXXVVFAAKG-QQQRGGSRKGNRRGIMEGLPSGVSSAAWHGKGFPEPGRGRRPRQHPDG-EQHQRGETTGARKRAKKGASGQQLLSESHTLTAFWCRGRGGASSGAGQGKAGSS 1329
            MNEVTGLDWCRAEPLKLATSSDDETVRVWTIDP+RVRH SAS+P +AGA ASARSSG ALGS P  XXXXXXXXX  VGAVSG GG VRSYPCHGKFGEGGARRGESSLWRRR PVD+RDGDQ  HCGDDRGPLVSR DG+GGQQQ+ A GV+ RRDGDG    RGQG QSHSRGTGERMNA XXXXXXXXXXXX STAVFSPCSPN RP ASSA       XXX          IATAPAH DTSQLFQASSNS   +SG DT DENM  RR IGAS EPXXXXXX   VV  AKG QQ+  GSRKG RRGIMEGLP GVSSAAWHGKGFPEP RGRRPRQHPDG EQ QR E TG+RK+AKKGASGQQL  ESHTL AFWCRGRGGASSGAGQ KAGSS
Sbjct:    1 MNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPVRVRHRSASAPVVAGAGASARSSG-ALGSDPDAXXXXXXXXXSSVGAVSGGGGEVRSYPCHGKFGEGGARRGESSLWRRRAPVDNRDGDQHAHCGDDRGPLVSRGDGSGGQQQIRAAGVDSRRDGDGXXXXRGQGHQSHSRGTGERMNAXXXXXXXXXXXXX-STAVFSPCSPNMRPGASSARPAETAAXXXXXXXXXXXXXIATAPAHDDTSQLFQASSNSE-TSSGADTMDENMGIRRVIGASAEPXXXXXXGSDVVAVAKGHQQETRGSRKGGRRGIMEGLPRGVSSAAWHGKGFPEPERGRRPRQHPDGVEQQQRPEATGSRKKAKKGASGQQLSRESHTLMAFWCRGRGGASSGAGQEKAGSS 398
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: A0A7S1EDB8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EDB8_HEMAN)

HSP 1 Score: 85.5 bits (210), Expect = 3.750e-16
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    7 SYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLR 237
            S+Y+K+  SPDG  + SG++D+ V +W V  P LP  RL GH  EV+ + WC  +  K+A+SSDD TVRVW +D  R
Sbjct:   73 SFYVKSSFSPDGRYVVSGSSDECVYVWDVATPLLPPVRLVGHKGEVSDVRWCPTDMCKIASSSDDTTVRVWNVDRAR 149
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: A0A6H5JP24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP24_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 7.950e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 RSSYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLT 126
            RSSYYIKAKLSPDGSLLASGAADD VCLWQVDCPGLP+ARLT
Sbjct:  471 RSSYYIKAKLSPDGSLLASGAADDAVCLWQVDCPGLPVARLT 512
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: A0A8J8XPD9_MAIZE (Denticleless n=6 Tax=Zea mays TaxID=4577 RepID=A0A8J8XPD9_MAIZE)

HSP 1 Score: 82.8 bits (203), Expect = 2.480e-13
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   10 YYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSASSPTIAGARA 285
            +++K+ +SPDG+ +  G++D  V LWQVD P    A L GH  E T +DWC +E  K+ATSSDD TVRVW+   +   +   SSPT+   RA
Sbjct:  383 FFVKSAISPDGTHILGGSSDGNVYLWQVDQPESVTAVLKGHEGEATSVDWCASEVGKIATSSDDSTVRVWSTKKMDCTN--VSSPTVIRKRA 472
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: V9L0G8_CALMI (Denticleless protein-like protein (Fragment) n=1 Tax=Callorhinchus milii TaxID=7868 RepID=V9L0G8_CALMI)

HSP 1 Score: 81.6 bits (200), Expect = 3.450e-13
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    4 SSYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTID 228
            S++Y+K+ LSPDG  L SG++D+   +W+V  P  P   L GH  EVT + WC ++  K+AT SDD TVR+W +D
Sbjct:  316 STFYVKSSLSPDGQFLLSGSSDNNAYIWKVSNPRQPPTVLQGHSQEVTSVTWCPSDFTKIATCSDDNTVRIWRLD 390
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: A0A4Z2IFB5_9TELE (Denticleless n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2IFB5_9TELE)

HSP 1 Score: 76.6 bits (187), Expect = 3.880e-13
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    4 SSYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTI 225
            SS+Y+K+ +SPD   LASG++D+   +W++  P  P   L GH  EVT + WC  +  K+A+ SDD TVR+W +
Sbjct:   23 SSFYVKSTISPDDQFLASGSSDNNAYVWKISDPKQPPMMLQGHSEEVTSVSWCPTDFTKIASCSDDHTVRIWRL 96
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: UPI001263BC89 (denticleless protein homolog A-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001263BC89)

HSP 1 Score: 78.2 bits (191), Expect = 6.190e-13
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    7 SYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTI 225
            S+Y+KA +SPD + + SG++D    +WQV+ P L    L  H  EVT +DWC  E  K+ATSSDD TVR+W I
Sbjct:   27 SFYVKAAISPDAAHILSGSSDGTAYVWQVNKPQLDPVMLKSHDGEVTAVDWCPFETGKMATSSDDFTVRLWNI 99
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: C5WNV5_SORBI (Uncharacterized protein n=11 Tax=Andropogoneae TaxID=147429 RepID=C5WNV5_SORBI)

HSP 1 Score: 81.3 bits (199), Expect = 7.960e-13
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    7 SYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSASSPTI 270
            S+++K+ +SPDG+ +  G++D  V LWQVD P      L GH  E T +DWC +E  K+ATSSDD TVRVW+   +   +   SSPT+
Sbjct:  330 SFFVKSAISPDGTHILGGSSDGNVYLWQVDRPESAPIVLKGHEGEATSVDWCASEVGKIATSSDDSTVRVWSTKKMDCTN--VSSPTV 415
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Match: A0A4W3I9B0_CALMI (Uncharacterized protein n=4 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3I9B0_CALMI)

HSP 1 Score: 81.6 bits (200), Expect = 7.980e-13
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    4 SSYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTGLDWCRAEPLKLATSSDDETVRVWTID 228
            S++Y+K+ LSPDG  L SG++D+   +W+V  P  P   L GH  EVT + WC ++  K+AT SDD TVR+W +D
Sbjct:  313 STFYVKSSLSPDGQFLLSGSSDNNAYIWKVSNPRQPPTVLQGHSQEVTSVTWCPSDFTKIATCSDDNTVRIWRLD 387
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14493.3454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHZ2_ECTSI2.500e-18575.51Denticleless homolog n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JL80_9PHAE1.510e-16779.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1EDB8_HEMAN3.750e-1648.05Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6H5JP24_9PHAE7.950e-1595.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J8XPD9_MAIZE2.480e-1345.65Denticleless n=6 Tax=Zea mays TaxID=4577 RepID=A0A... [more]
V9L0G8_CALMI3.450e-1346.67Denticleless protein-like protein (Fragment) n=1 T... [more]
A0A4Z2IFB5_9TELE3.880e-1343.24Denticleless n=1 Tax=Liparis tanakae TaxID=230148 ... [more]
UPI001263BC896.190e-1349.32denticleless protein homolog A-like n=1 Tax=Pistac... [more]
C5WNV5_SORBI7.960e-1345.45Uncharacterized protein n=11 Tax=Andropogoneae Tax... [more]
A0A4W3I9B0_CALMI7.980e-1346.67Uncharacterized protein n=4 Tax=Callorhinchus mili... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14493contigEcto-sp13_S_contig14493:830..3587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score562.0
Seed ortholog evalue2.5e-157
Seed eggNOG ortholog2880.D8LHZ2
Model size1332
KEGG koko:K11790
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000151,GO:0000209,GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010564,GO:0010948,GO:0015630,GO:0016567,GO:0018130,GO:0019438,GO:0019538,GO:0019941,GO:0019985,GO:0023052,GO:0030163,GO:0031461,GO:0031464,GO:0031465,GO:0031570,GO:0031572,GO:0032446,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0036211,GO:0042770,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045786,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0051726,GO:0065007,GO:0070647,GO:0071704,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0072425,GO:0080008,GO:0090304,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1902494,GO:1902749,GO:1902750,GO:1990234
Exons2
EggNOG free text desc.signal transduction involved in G2 DNA damage checkpoint
EggNOG OGsKOG0321@1,KOG0321@2759
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-18_001110.3
Cds size1332
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462773.5034227-CDS-Ecto-sp13_S_contig14493:829..9551681462773.5034227-CDS-Ecto-sp13_S_contig14493:829..955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14493 830..955 +
1681462773.5210476-CDS-Ecto-sp13_S_contig14493:2381..35871681462773.5210476-CDS-Ecto-sp13_S_contig14493:2381..3587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14493 2382..3587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14493.3454.1prot_Ecto-sp13_S_contig14493.3454.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14493 830..3587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14493.3454.1

>prot_Ecto-sp13_S_contig14493.3454.1 ID=prot_Ecto-sp13_S_contig14493.3454.1|Name=mRNA_Ecto-sp13_S_contig14493.3454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=444bp
RSSYYIKAKLSPDGSLLASGAADDVVCLWQVDCPGLPIARLTGHMNEVTG
LDWCRAEPLKLATSSDDETVRVWTIDPLRVRHHSASSPTIAGARASARSS
GGALGSGPAAAAAAAVGGGSSVGAVSGSGGGVRSYPCHGKFGEGGARRGE
SSLWRRRVPVDDRDGDQRGHCGDDRGPLVSRSDGAGGQQQVWAVGVERRR
DGDGGRGSRGQGRQSHSRGTGERMNAAASGGGGNWGGGGGSTAVFSPCSP
NKRPVASSARPAETAARAKGDAAAVDGGSIATAPAHGDTSQLFQASSNSG
GMTSGEDTPDENMDSRRAIGASTEPPPPPTTGSDVVFAAKGQQQRGGSRK
GNRRGIMEGLPSGVSSAAWHGKGFPEPGRGRRPRQHPDGEQHQRGETTGA
RKRAKKGASGQQLLSESHTLTAFWCRGRGGASSGAGQGKAGSS*
back to top

mRNA from alignment at Ecto-sp13_S_contig14493:830..3587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14493.3454.1 ID=mRNA_Ecto-sp13_S_contig14493.3454.1|Name=mRNA_Ecto-sp13_S_contig14493.3454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2758bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14493:830..3587+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTCGTCGTACTACATCAAGGCGAAACTGTCCCCCGATGGATCCCTCTT
GGCCAGCGGTGCCGCAGACGATGTAGTGTGTCTGTGGCAGGTGGATTGCC
CGGGCCTTCCCATAGCTAGGCTCACGGTGAGTTTTGTCATCTTTTTTGCC
TTATCTTTTTACGGTGGTTTTCAGCGTCGCATCGTAGCCGAGGGAAGGAG
TTCTTTCTGAGGGGCGGTAAGCGGGCGGGTTGTTGTTCTGGGCGTGGGTC
ACCGCCTGTAAGCCTTGCCGGTGATTGTTGGGAGTAAGGCCGGTGATTGT
TGGGTGCGAGGACTGGTGGGTTGGAAAGATGGTGCACAGTCATTGTTGCT
TGATTACACACGGTGTACGCTCTCGTTCGTGGGGCCTTCTCGAAGCAAGA
ATCGAAATGTCATTTTCAATTGTGGCAACTTTGATGGGGGCCATTTTTGC
CCTGGGGTGTGATATTGGGTCAAGTGATTGTGGCAGACCATTTAAAACTG
AAAGATGCCAGCACGCGGGCGACCCTCGTTTGGCGTGGGTAAATTGACGT
TAGCGGCCGCACGATTCTCTCTACCCCATGTCCCTGCTGCACATGCCATC
GAGCCAGCCAGATTCCGTGTTCCCGCGAGTGTTAGATGGCGTGTCAATGC
ACACCTGTGTGTATTTGTTTTCGAATCATTCGGTGCTCGGTTGGTGTGCG
AGTGTCTTGAGGAGGGTGGTCAAAGACTGCCGTCCTTCAGCAGTGCGTGT
ACACGATGGGAATGCGACCAGGGGTGACGCTGGCCACTTTGTCGAGCCCC
CGCCCCCCCCCGGAATCGGCGCTTCGCGCTTGGAGATGTGAGAGCCTGGT
CCGATGAAAACCCGGCGTGCTCGGTCCCGGCTTTGTAGGGTTGCGAGGTC
AATGGTCTAACGACAACGGCATGGACGACTATGAGTAACCCCCCCCCCGC
CCCGTATCGGTGACCAATCCTGTGGGACATTGCTCCGTCTTCTCGAGGAC
GAGTGGTCAATAGTCAAACCGCTGAGGCATGCAAAATATGAATACGCCCC
CGCCCCTATGGTGCTCGGGTAGACTGTGCGGGGTCGAGAACCCTCACTCC
ACGCAAAGGCGATGGACGCACCACGTTCTGCTCAGTTGGTCAAGCACCCT
GGAGGAAGTTACACAGTGGTTGCAACTGTCTCTGGAAGCGAAAGCACCGG
AAAATAAATAAAGTAATTCGCTGCTGCCATCCGTTTGCAAAGGAGGCAAG
TACAAGATACCGGCCACCCCTGGCAGGATGCAGCGCACCCTCCATGCGAC
TCGCTGAATACCTCAAAGCGCTTCGCGCTTGGTGATGTAAGAACCTGGTC
CGGTGAAAGCCCGGCGGGCTCCGTCCCGGGTTCGTAGGGATGCGAGGTCA
ATGATCTAACGACTACGTCATGCATGACTATGAGAACACCCTCCCCCCCC
ACCCCGCTCCGTCCTCTCGACGACGCGTTGTCAATGGTCTAACCGCCGAG
GCATGCAAAATATAAGAGTGTGCCCCCCCTCCCTCCCCCCCCCTCCCCCC
AGGGGCACATGAACGAAGTGACAGGGTTGGACTGGTGCCGCGCGGAGCCT
CTGAAACTGGCCACCAGCTCGGACGACGAGACCGTGCGAGTCTGGACCAT
CGACCCCCTCCGCGTCAGACACCACTCGGCCTCTTCCCCTACCATTGCCG
GCGCCCGTGCTTCCGCTCGATCATCGGGAGGAGCGTTGGGCTCTGGCCCG
GCCGCCGCGGCGGCGGCGGCCGTCGGAGGAGGTTCTTCCGTTGGCGCGGT
CAGCGGTAGCGGCGGGGGGGTGCGCTCGTACCCTTGCCACGGCAAGTTTG
GAGAGGGAGGCGCACGCCGCGGCGAGAGCTCGCTGTGGAGACGGAGGGTC
CCCGTGGACGATCGTGATGGTGATCAGCGCGGTCATTGTGGTGATGATCG
TGGGCCTCTTGTTTCCCGGAGTGATGGGGCCGGGGGACAGCAGCAAGTCT
GGGCCGTCGGCGTGGAGCGGCGGCGTGATGGTGACGGCGGCCGCGGCAGC
CGGGGCCAGGGCCGCCAGAGTCACAGCCGCGGTACGGGCGAGAGGATGAA
TGCGGCGGCTAGCGGCGGCGGAGGCAACTGGGGCGGCGGCGGCGGATCGA
CTGCCGTGTTCTCTCCCTGTTCGCCCAACAAGCGACCCGTGGCTTCTTCT
GCAAGGCCCGCGGAGACGGCTGCCCGCGCTAAGGGCGACGCTGCTGCTGT
CGATGGCGGTAGTATCGCCACCGCACCCGCGCACGGCGACACGTCACAAC
TGTTTCAAGCGTCGTCGAACAGCGGCGGGATGACCTCTGGAGAGGACACC
CCGGACGAGAACATGGACTCCCGGAGGGCAATTGGCGCGTCTACGGAGCC
CCCACCTCCACCAACCACCGGCTCGGACGTGGTTTTTGCTGCGAAAGGGC
AGCAGCAGAGGGGAGGGTCAAGAAAAGGGAATCGTCGCGGAATCATGGAG
GGACTCCCCAGCGGGGTGTCCTCGGCCGCGTGGCACGGAAAAGGCTTCCC
TGAGCCAGGGCGAGGGCGTCGGCCGCGGCAACACCCGGACGGAGAGCAGC
ATCAGAGGGGGGAAACTACCGGGGCTCGGAAGAGGGCGAAAAAGGGGGCC
TCCGGACAGCAGTTGCTTAGCGAAAGCCACACCCTGACGGCGTTTTGGTG
CCGGGGACGAGGGGGGGCGTCGAGCGGTGCGGGGCAGGGAAAGGCGGGCT
CGAGCTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14493:830..3587+

>mRNA_Ecto-sp13_S_contig14493.3454.1 ID=mRNA_Ecto-sp13_S_contig14493.3454.1|Name=mRNA_Ecto-sp13_S_contig14493.3454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1332bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14493:830..3587+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTCGTCGTACTACATCAAGGCGAAACTGTCCCCCGATGGATCCCTCTT
GGCCAGCGGTGCCGCAGACGATGTAGTGTGTCTGTGGCAGGTGGATTGCC
CGGGCCTTCCCATAGCTAGGCTCACGGGGCACATGAACGAAGTGACAGGG
TTGGACTGGTGCCGCGCGGAGCCTCTGAAACTGGCCACCAGCTCGGACGA
CGAGACCGTGCGAGTCTGGACCATCGACCCCCTCCGCGTCAGACACCACT
CGGCCTCTTCCCCTACCATTGCCGGCGCCCGTGCTTCCGCTCGATCATCG
GGAGGAGCGTTGGGCTCTGGCCCGGCCGCCGCGGCGGCGGCGGCCGTCGG
AGGAGGTTCTTCCGTTGGCGCGGTCAGCGGTAGCGGCGGGGGGGTGCGCT
CGTACCCTTGCCACGGCAAGTTTGGAGAGGGAGGCGCACGCCGCGGCGAG
AGCTCGCTGTGGAGACGGAGGGTCCCCGTGGACGATCGTGATGGTGATCA
GCGCGGTCATTGTGGTGATGATCGTGGGCCTCTTGTTTCCCGGAGTGATG
GGGCCGGGGGACAGCAGCAAGTCTGGGCCGTCGGCGTGGAGCGGCGGCGT
GATGGTGACGGCGGCCGCGGCAGCCGGGGCCAGGGCCGCCAGAGTCACAG
CCGCGGTACGGGCGAGAGGATGAATGCGGCGGCTAGCGGCGGCGGAGGCA
ACTGGGGCGGCGGCGGCGGATCGACTGCCGTGTTCTCTCCCTGTTCGCCC
AACAAGCGACCCGTGGCTTCTTCTGCAAGGCCCGCGGAGACGGCTGCCCG
CGCTAAGGGCGACGCTGCTGCTGTCGATGGCGGTAGTATCGCCACCGCAC
CCGCGCACGGCGACACGTCACAACTGTTTCAAGCGTCGTCGAACAGCGGC
GGGATGACCTCTGGAGAGGACACCCCGGACGAGAACATGGACTCCCGGAG
GGCAATTGGCGCGTCTACGGAGCCCCCACCTCCACCAACCACCGGCTCGG
ACGTGGTTTTTGCTGCGAAAGGGCAGCAGCAGAGGGGAGGGTCAAGAAAA
GGGAATCGTCGCGGAATCATGGAGGGACTCCCCAGCGGGGTGTCCTCGGC
CGCGTGGCACGGAAAAGGCTTCCCTGAGCCAGGGCGAGGGCGTCGGCCGC
GGCAACACCCGGACGGAGAGCAGCATCAGAGGGGGGAAACTACCGGGGCT
CGGAAGAGGGCGAAAAAGGGGGCCTCCGGACAGCAGTTGCTTAGCGAAAG
CCACACCCTGACGGCGTTTTGGTGCCGGGGACGAGGGGGGGCGTCGAGCG
GTGCGGGGCAGGGAAAGGCGGGCTCGAGCTAA
back to top