prot_Ecto-sp13_S_contig13212.2602.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig13212.2602.1
Unique Name	prot_Ecto-sp13_S_contig13212.2602.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	50

Homology

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BLAST of mRNA_Ecto-sp13_S_contig13212.2602.1 vs. uniprot
Match: D8LFP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP2_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 6.460e-13
Identity = 41/50 (82.00%), Postives = 42/50 (84.00%), Query Frame = 0

Query:    1 MTGLANSAGQFFMYWLYFILWIALMVFTGMMLVMVLPNIQVAETLGSALS 50
            MT LANSA QFFMYWLYFILWI+LMVFTGMMLVMV      AETLGSALS
Sbjct: 1201 MTDLANSAHQFFMYWLYFILWISLMVFTGMMLVMV------AETLGSALS 1244

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BLAST of mRNA_Ecto-sp13_S_contig13212.2602.1 vs. uniprot
Match: D8LFN4_ECTSI (Pleiotropic drug resistance transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN4_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.470e-11
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query:    1 MTGLANSAGQFFMYWLYFILWIALMVFTGMMLVMVLPNIQVAETLGSALS 50
            +TGLA+SA QFFMYWLYF      MVFTGMM VMVLPN QVA+TL  ALS
Sbjct: 1289 ITGLADSADQFFMYWLYFXXXXXXMVFTGMMFVMVLPNTQVAQTLAGALS 1338

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BLAST of mRNA_Ecto-sp13_S_contig13212.2602.1 vs. uniprot
Match: A0A6H5K7U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U8_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.000e-11
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query:    1 MTGLANSAGQFFMYWLYFILWIALMVFTGMMLVMVLPNIQVAETLGSALS 50
            +TGLA+SA +FFMYWLYF+     MVFTGMM VMVLPN QVA+TL  ALS
Sbjct:  554 ITGLADSADRFFMYWLYFLXXXXXMVFTGMMFVMVLPNTQVAQTLAGALS 603

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig13212.2602.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig13212.2602.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LFP2_ECTSI	6.460e-13	82.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LFN4_ECTSI	1.470e-11	72.00	Pleiotropic drug resistance transporter n=1 Tax=Ec...	[more]
A0A6H5K7U8_9PHAE	2.000e-11	70.00	ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..36
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 37..50
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 13..35

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig13212	contig	Ecto-sp13_S_contig13212:3510..4742 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig13212.2602.1	mRNA_Ecto-sp13_S_contig13212.2602.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig13212 3483..4742 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig13212.2602.1 ID=prot_Ecto-sp13_S_contig13212.2602.1|Name=mRNA_Ecto-sp13_S_contig13212.2602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MTGLANSAGQFFMYWLYFILWIALMVFTGMMLVMVLPNIQVAETLGSALS