mRNA_Ecto-sp13_S_contig13212.2602.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13212.2602.1
Unique NamemRNA_Ecto-sp13_S_contig13212.2602.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13212.2602.1 vs. uniprot
Match: D8LFP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP2_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.220e-19
Identity = 50/59 (84.75%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 LAFCSIFYWMTGLANSAGQFFMYWLYFILWIALMVFTGMMLVMVLPNIQVAETLGSALS 177
            LAFCSIFYWMT LANSA QFFMYWLYFILWI+LMVFTGMMLVMV      AETLGSALS
Sbjct: 1192 LAFCSIFYWMTDLANSAHQFFMYWLYFILWISLMVFTGMMLVMV------AETLGSALS 1244
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BLAST of mRNA_Ecto-sp13_S_contig13212.2602.1 vs. uniprot
Match: D8LFN4_ECTSI (Pleiotropic drug resistance transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN4_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 5.000e-18
Identity = 45/59 (76.27%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 LAFCSIFYWMTGLANSAGQFFMYWLYFILWIALMVFTGMMLVMVLPNIQVAETLGSALS 177
            LAFCSIFYW+TGLA+SA QFFMYWLYF      MVFTGMM VMVLPN QVA+TL  ALS
Sbjct: 1280 LAFCSIFYWITGLADSADQFFMYWLYFXXXXXXMVFTGMMFVMVLPNTQVAQTLAGALS 1338
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BLAST of mRNA_Ecto-sp13_S_contig13212.2602.1 vs. uniprot
Match: A0A6H5K7U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U8_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.790e-18
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 LAFCSIFYWMTGLANSAGQFFMYWLYFILWIALMVFTGMMLVMVLPNIQVAETLGSALS 177
            LAFCSIFYW+TGLA+SA +FFMYWLYF+     MVFTGMM VMVLPN QVA+TL  ALS
Sbjct:  545 LAFCSIFYWITGLADSADRFFMYWLYFLXXXXXMVFTGMMFVMVLPNTQVAQTLAGALS 603
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13212.2602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFP2_ECTSI2.220e-1984.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFN4_ECTSI5.000e-1876.27Pleiotropic drug resistance transporter n=1 Tax=Ec... [more]
A0A6H5K7U8_9PHAE6.790e-1874.58ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13212contigEcto-sp13_S_contig13212:3483..4742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score70.9
Seed ortholog evalue2e-10
Seed eggNOG ortholog2880.D8LFP2
Model size179
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG free text desc.ATPase activity
EggNOG OGsCOG1131@1,KOG0065@2759
Cds size150
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.3466356-UTR-Ecto-sp13_S_contig13212:3482..35091681462707.3466356-UTR-Ecto-sp13_S_contig13212:3482..3509Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13212 3483..3509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.3566866-CDS-Ecto-sp13_S_contig13212:3509..35531681462707.3566866-CDS-Ecto-sp13_S_contig13212:3509..3553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13212 3510..3553 +
1681462707.366268-CDS-Ecto-sp13_S_contig13212:4159..42171681462707.366268-CDS-Ecto-sp13_S_contig13212:4159..4217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13212 4160..4217 +
1681462707.3796287-CDS-Ecto-sp13_S_contig13212:4694..47421681462707.3796287-CDS-Ecto-sp13_S_contig13212:4694..4742Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13212 4695..4742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13212.2602.1prot_Ecto-sp13_S_contig13212.2602.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13212 3510..4742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13212.2602.1

>prot_Ecto-sp13_S_contig13212.2602.1 ID=prot_Ecto-sp13_S_contig13212.2602.1|Name=mRNA_Ecto-sp13_S_contig13212.2602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MTGLANSAGQFFMYWLYFILWIALMVFTGMMLVMVLPNIQVAETLGSALS
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mRNA from alignment at Ecto-sp13_S_contig13212:3483..4742+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13212.2602.1 ID=mRNA_Ecto-sp13_S_contig13212.2602.1|Name=mRNA_Ecto-sp13_S_contig13212.2602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1260bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13212:3483..4742+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGCCTTCTGCTCGATCTTCTACTGGATGACGGGCCTCGCCAACTCGGC
CGGCCAGTTCTTCATGTACTGGTAAGGCGCGAGGCCACTGGCTGTTACAG
CTCATCCCCTGTCGATGCCATTCGTTGTGGAACGTGGGCATTTATTGGGA
ATTTTCCATGCCCATACCCAAGTTTGGAGGGTCGCGTGTATCGATGATGA
GCACCTACCCAAATTTGGAGAGTTGCGTGTATCGATGATGAGCAACCGCG
CTTTGTGTACCACCACCCTTCAGGGATGGGCACAAAGGGCAAGCACCAAT
CTTGCTAAAGCTCGCAGGCTAGCGTAGGTTTCATACGTAAGATACCACAC
CCGCTGGACCGATTATCAAAGCTCGACTGTTGGACGAGGAAGAGGAAGCC
AAAATGAAACAATACGTGATCGGAAAGCCCTTCACGAAGCCGTTCCAAAG
CCGACGGTTTCGACGTGGTCGTCTTGTTTGAGCCGGAGAGAAAGCGAGCT
TGAAAATCTTCCCAGGAGGCGCGGAATCTTGTTCGACTTACGGCACTCCT
GCGCAACTCGACCTCCATGTTCTCACCTTCAAGGTAGCAACAACATGTTT
CCGACATTTCACGCCCTGTTGTGTTATCATCTCCGAGAACTCCGTTGCGC
GTGCTGTGCCCTCATTCCCCCAACCAGGCTCTACTTCATCCTGTGGATAG
CCCTAATGGTCTTTACTGGCATGATGCTCGTGATGGTAAGATCTCTTACC
GTCTGTGTAGAAATTGCACGTGCCAAGCAGTGTGGTTGAAAAGATCGCCG
TGTTATTCTGTCTTAGCCCCTCCCTCTCATTTTTGAAGCAATGACCACGT
GCTTGTAAACCCAGACGATACGTACACCTCTTAGTGTAACATGGCGGCTC
TGGATCGAAGCGCGTACTGCTTTCATAAGCCTACGTGGCGCTCTCCGTCT
CTTGAGCTGTTTTACTATTTTCGTTCCTTTCTTCCTTAGTTTTGTATGCT
CCACATGCCCCTCGATCTCTCTCGTCGATCCGCTTGTTCTGTAGGCCTAG
CGTGAGCAATCTGTTTGGACTAAATCCGCTTCCCTCTCATGCCCTTTCGT
GTGGCCGGTACATCTACATACCACGAGCACGATAGTACTGCTGATGAATC
TGAAATAATTCGATGCTGCGATGCTATTTTAAGGATACTCGCAATGTCGT
TGTCTGCCGAAGGTCCTGCCGAACATCCAGGTGGCCGAAACCTTGGGAAG
CGCCCTGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13212:3483..4742+

>mRNA_Ecto-sp13_S_contig13212.2602.1 ID=mRNA_Ecto-sp13_S_contig13212.2602.1|Name=mRNA_Ecto-sp13_S_contig13212.2602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13212:3483..4742+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGGCCTCGCCAACTCGGCCGGCCAGTTCTTCATGTACTGGCTCTA
CTTCATCCTGTGGATAGCCCTAATGGTCTTTACTGGCATGATGCTCGTGA
TGGTCCTGCCGAACATCCAGGTGGCCGAAACCTTGGGAAGCGCCCTGTCG
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