prot_Ecto-sp13_S_contig12328.1948.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12328.1948.1
Unique Nameprot_Ecto-sp13_S_contig12328.1948.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length259
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12328.1948.1 vs. uniprot
Match: D8LGY5_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY5_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 1.010e-132
Identity = 185/193 (95.85%), Postives = 188/193 (97.41%), Query Frame = 0 
Query:    9 IRQKKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPHGYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCHHREAVPPRSPRCSSFTDRRQRTSAAPAAEPPRA 201
            +  +KTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYP GYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQC+ REA PPRSPRCSSFTDRRQRTSAAPAAEPPRA
Sbjct:   31 LANRKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPPGYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCYRREAAPPRSPRCSSFTDRRQRTSAAPAAEPPRA 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12328.1948.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY5_ECTSI1.010e-13295.85C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 11..38
e-value: 1.5E-6
score: 37.8
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 12..37
e-value: 1.7E-5
score: 24.6
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 11..39
score: 14.671
NoneNo IPR availableGENE3D4.10.1000.10coord: 9..43
e-value: 1.7E-10
score: 42.1
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 11..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12328contigEcto-sp13_S_contig12328:2392..4674 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12328.1948.1mRNA_Ecto-sp13_S_contig12328.1948.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12328 2392..4674 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12328.1948.1 ID=prot_Ecto-sp13_S_contig12328.1948.1|Name=mRNA_Ecto-sp13_S_contig12328.1948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
MVHLIDCSIRQKKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEA
IARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGN
TPVRGSRHTRHWSSPATRYPHGYYSNGQPRTPHHQRSRSYPSPSSSDFSD
SYGFGVAVDAPPVSPQCHHREAVPPRSPRCSSFTDRRQRTSAAPAAEPPR
APPGGHGGRYARRVVYSSGSSPAGRAAPASPASWAHAGTRQQPGGGGGGG
GGGGRTGAN
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf